Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017019.1 Corchorus olitorius cultivar O-4 contig17052, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20144

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2739--2794
18
2.9
18
80
20
60
42
12
10
33
1.77
2739--2956
22
10.1
22
77
8
155
38
17
9
34
1.82
2739--2956
44
5.1
44
77
8
182
38
17
9
34
1.82
2759--2945
87
2.2
88
80
10
210
38
17
9
35
1.81
2985--3090
22
4.6
22
74
15
65
32
21
8
37
1.84
3040--3090
26
2.0
26
88
7
77
27
29
9
33
1.89
2985--3105
22
5.3
22
67
19
61
33
19
8
38
1.82
3162--3231
22
3.2
22
69
18
56
34
17
12
35
1.88
4461--4814
118
3.0
118
90
4
552
33
6
24
35
1.81
5311--5400
34
2.8
32
85
9
121
31
18
26
23
1.98
5305--5401
31
3.0
32
81
11
117
28
20
25
24
1.99
5516--5566
26
2.0
26
88
7
77
23
3
19
52
1.62
5785--5849
28
2.3
28
97
0
121
23
26
21
29
1.99
18190--18231
15
2.7
15
92
3
66
64
14
9
11
1.50

Tables:   1

The End!