Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017025.1 Corchorus olitorius cultivar O-4 contig17058, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  127187

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3195--3230
19
1.9
18
88
5
54
27
22
8
41
1.82
5118--5179
24
2.5
26
84
5
74
19
8
9
62
1.50
12600--12764
84
2.0
84
97
0
312
20
23
27
28
1.99
16979--17023
18
2.5
18
88
0
63
31
6
13
48
1.68
19274--19326
11
5.2
10
78
17
56
41
1
18
37
1.62
19286--19321
19
1.9
18
88
5
54
41
0
22
36
1.54
19905--19930
12
2.2
12
100
0
52
7
15
7
69
1.35
21940--21984
23
2.0
23
100
0
90
26
4
15
53
1.61
22837--22878
15
2.7
15
96
3
75
66
14
7
11
1.43
28649--28719
34
2.1
35
89
2
108
47
18
5
28
1.71
29088--29126
15
2.5
15
95
4
69
66
12
7
12
1.43
39013--39049
19
1.9
19
94
0
65
62
0
5
32
1.18
46289--46348
29
2.1
29
100
0
120
3
38
38
20
1.69
50542--50670
60
2.1
61
91
1
206
20
10
17
51
1.73
51289--51315
12
2.2
12
100
0
54
85
0
7
7
0.75
56203--56252
22
2.2
24
82
7
59
6
18
0
76
0.99
56213--56302
6
14.5
6
74
13
58
3
21
0
75
0.94
56226--56303
27
2.8
26
81
14
86
1
23
0
75
0.87
56210--56302
33
2.8
31
78
19
98
3
20
0
76
0.93
60743--60781
6
6.5
6
85
11
53
71
0
0
28
0.86
67423--67996
59
9.8
59
84
2
663
42
16
15
25
1.87
67424--67996
236
2.4
235
87
2
808
42
16
15
25
1.87
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
68198--68428
115
2.0
115
99
0
453
29
23
11
35
1.90
69015--69093
37
2.1
38
88
9
117
11
22
10
55
1.65
74541--74571
9
3.4
9
95
0
53
35
19
22
22
1.96
83040--83091
27
2.0
27
92
3
88
34
28
5
30
1.81
91090--91129
15
2.6
16
88
4
55
15
10
12
62
1.54
100554--100611
29
2.0
29
100
0
116
48
17
17
17
1.82
102485--102520
19
1.9
18
88
5
54
41
2
22
33
1.68
111629--111773
41
3.5
41
83
3
157
33
17
15
33
1.91
123621--123645
5
5.0
5
100
0
50
20
0
80
0
0.72

Tables:   1

The End!