Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017026.1 Corchorus olitorius cultivar O-4 contig17059, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30545

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1021--1057
2
19.5
2
83
10
51
48
0
2
48
1.15
1285--1346
22
2.8
23
71
9
58
30
6
6
56
1.50
1601--1647
13
3.8
12
78
13
51
40
0
4
55
1.19
1772--1849
6
13.3
6
74
15
65
30
46
19
3
1.68
1793--1849
23
2.5
23
97
0
105
31
45
17
5
1.71
1839--1926
32
2.8
32
87
0
122
38
39
14
6
1.73
1839--1926
16
5.5
16
71
10
81
38
39
14
6
1.73
2924--2981
29
2.0
29
86
3
82
55
5
6
32
1.49
5609--5669
26
2.4
26
88
2
88
13
11
16
59
1.62
8225--8271
13
3.6
13
78
18
53
59
8
0
31
1.27
10173--10209
9
4.0
9
86
6
56
64
5
18
10
1.43
10169--10208
19
2.1
19
95
0
71
67
7
15
10
1.41
27914--27958
22
2.0
22
82
4
54
13
11
8
66
1.44
28175--28244
31
2.3
31
90
5
106
27
25
21
25
1.99

Tables:   1

The End!