Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017027.1 Corchorus olitorius cultivar O-4 contig17060, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  10877

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3167--3217
27
1.9
27
84
4
68
43
21
15
19
1.88
3483--3663
50
3.6
50
93
1
292
27
24
11
35
1.90
3718--4053
50
6.7
50
92
1
557
26
12
30
30
1.93
4140--4341
91
2.3
88
86
4
271
37
13
19
29
1.90
4756--4899
50
2.9
50
86
2
202
38
13
17
30
1.89
4758--4911
48
3.1
48
86
2
209
38
12
16
31
1.86
5178--5208
1
31.0
1
93
0
53
0
0
3
96
0.21
5491--5556
5
13.6
5
75
22
61
16
1
15
66
1.32
5491--5568
11
6.8
11
73
21
63
16
1
16
65
1.34
5496--5551
19
3.1
18
85
10
78
16
1
14
67
1.31
5490--5557
24
3.0
22
84
6
82
16
1
14
67
1.30
5941--5991
23
2.3
20
83
12
57
5
11
0
82
0.83
6361--6508
76
1.9
76
82
2
181
31
20
10
37
1.87
7834--7875
21
2.0
22
90
4
68
35
11
28
23
1.91

Tables:   1

The End!