Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017028.1 Corchorus olitorius cultivar O-4 contig17061, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  29609

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
617--667
27
1.9
27
84
4
68
43
21
15
19
1.88
3225--3326
32
3.2
32
85
2
143
30
16
25
27
1.97
5418--5462
22
2.0
22
87
8
65
40
17
2
40
1.62
14277--14330
20
2.7
21
82
8
58
16
11
18
53
1.72
14980--15016
18
2.1
18
89
0
56
45
5
8
40
1.56
24301--24329
10
3.0
10
95
5
51
31
0
0
68
0.89
25785--25851
26
2.5
27
87
2
91
34
7
16
41
1.76
25909--26047
7
19.9
7
92
0
197
18
1
23
56
1.49
26203--26281
34
2.4
34
89
2
115
31
6
17
44
1.74
26319--26428
55
2.0
55
85
5
150
32
20
17
29
1.96
26477--26518
18
2.3
18
83
0
57
52
9
14
23
1.71
26504--26699
37
5.3
37
66
9
94
41
13
18
26
1.87
26568--26923
37
9.7
36
77
9
297
44
16
17
22
1.87
26568--26936
111
3.3
109
81
6
343
43
15
17
23
1.87
26586--26936
74
4.8
73
82
6
345
43
15
17
22
1.87
26601--26906
147
2.1
148
89
3
465
44
16
17
21
1.86
27893--27919
11
2.5
11
100
0
54
0
14
0
85
0.61
27887--27939
16
3.2
16
81
2
61
1
13
3
81
0.92
28576--28614
14
2.9
13
92
7
69
35
10
7
46
1.67

Tables:   1

The End!