genome.fa.s17030.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017030.1 Corchorus olitorius cultivar O-4 contig17063, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  70446

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2013--2062	21	2.4	21	79	0	55	18	46	20	16	1.85
5708--5743	19	1.9	18	88	5	54	33	22	2	41	1.68
7894--7929	19	1.9	18	88	5	54	33	22	2	41	1.68
11062--11739	339	2.0	339	95	0	1223	25	20	23	31	1.98
24087--24127	22	1.9	22	85	5	57	26	17	4	51	1.65
28430--28912	21	22.1	21	70	18	276	51	4	22	21	1.65
28472--28501	15	2.1	14	93	6	51	63	3	13	20	1.43
28535--28898	62	6.3	58	68	19	201	51	4	22	21	1.65
28598--28669	15	5.0	14	67	23	51	55	5	19	19	1.62
28749--28885	7	19.9	7	71	14	88	54	3	24	18	1.60
28732--28884	34	4.5	34	71	19	113	53	3	24	18	1.59
28804--28875	26	2.6	27	86	8	101	54	2	23	19	1.57
28426--28850	83	5.2	82	77	11	298	52	4	22	21	1.65
28770--28909	69	2.0	68	90	4	219	52	3	24	19	1.61
28797--28922	35	3.6	35	75	12	116	53	3	22	20	1.62
33145--33169	6	4.2	6	100	0	50	84	0	16	0	0.63
44595--44639	19	2.4	19	92	0	72	31	22	8	37	1.85
44669--44724	27	2.1	27	80	12	62	39	14	25	21	1.91
45478--45536	18	3.2	18	73	21	50	1	28	0	69	0.98
45492--45538	18	2.6	18	76	13	51	2	31	0	65	1.04
52646--52687	15	2.9	14	83	13	50	23	2	0	73	0.94
52645--52686	10	4.2	10	78	9	50	21	2	0	76	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
55605--55697	48	1.9	48	97	0	177	27	33	7	31	1.85
60555--60658	50	2.1	50	100	0	208	39	20	15	25	1.91
63665--63693	15	1.9	15	100	0	58	13	6	6	72	1.26
65343--65377	18	1.9	18	88	0	52	45	5	11	37	1.64
69062--69089	2	14.0	2	100	0	56	50	0	0	50	1.00
69089--69130	2	21.0	2	95	0	75	52	0	47	0	1.00

Tables:   1

The End!