Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017032.1 Corchorus olitorius cultivar O-4 contig17065, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  37809

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
574--605
16
1.9
17
93
6
57
81
0
9
9
0.88
2843--2882
21
2.0
20
85
5
53
25
25
12
37
1.91
8061--8091
16
1.9
16
100
0
62
6
9
25
58
1.54
8769--8940
87
2.0
87
100
0
344
20
11
23
44
1.84
11480--11759
76
3.7
76
84
1
357
19
25
33
21
1.97
19332--19393
31
2.0
31
93
0
106
24
11
14
50
1.75
23192--23218
13
2.1
13
100
0
54
29
7
14
48
1.71
25894--25938
15
2.9
16
83
9
58
8
75
0
15
1.03
34278--34343
30
2.2
30
89
5
98
25
16
13
43
1.85
36604--36664
32
1.9
32
100
0
122
63
11
9
14
1.51
36973--37012
17
2.4
17
100
0
80
57
10
0
32
1.32
37044--37086
15
2.9
14
83
10
50
41
2
0
55
1.12
37038--37086
21
2.5
21
87
9
68
38
4
0
57
1.18

Tables:   1

The End!