Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017034.1 Corchorus olitorius cultivar O-4 contig17067, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50072

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3928--3961
17
2.0
17
100
0
68
64
5
5
23
1.38
11663--11719
29
2.0
28
86
6
78
75
0
19
5
0.99
11644--11717
39
1.9
38
84
10
98
72
0
18
8
1.08
12061--12120
9
6.6
9
82
3
57
81
0
16
1
0.77
12415--12468
5
11.0
5
77
15
51
81
16
1
0
0.78
12416--12475
11
5.3
11
80
7
66
83
13
3
0
0.77
27818--27907
26
3.4
26
64
8
65
32
20
12
35
1.89
27792--28137
52
6.5
53
89
3
484
29
20
14
35
1.93
27792--27934
27
5.4
27
63
12
89
31
19
14
34
1.92
29014--29065
27
1.9
27
96
0
95
17
13
23
46
1.83
29019--29072
27
2.0
27
92
3
92
22
12
22
42
1.87
34272--34311
20
2.0
21
90
5
64
22
40
2
35
1.68
35246--35298
25
2.2
25
89
3
81
41
5
3
49
1.44
36900--36950
25
2.0
27
84
7
70
64
7
7
19
1.44
38501--38705
38
5.3
38
78
9
202
37
15
14
33
1.88
38501--38699
37
5.1
37
80
9
195
37
15
14
33
1.87
38501--38659
75
2.1
77
89
4
243
38
15
13
32
1.86
39543--39612
3
23.3
3
100
0
140
0
34
0
65
0.93
42626--42708
40
2.1
40
93
0
139
61
2
21
14
1.44
44041--44145
31
3.5
30
79
8
106
42
22
14
20
1.88
44264--44288
13
1.9
13
100
0
50
80
12
0
8
0.92
44911--44940
2
15.0
2
100
0
60
50
0
0
50
1.00
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45114--45149
2
18.0
2
100
0
72
50
0
0
50
1.00
46111--46181
24
3.0
24
89
0
106
22
7
29
40
1.80
48727--48767
21
2.0
21
90
0
64
41
36
9
12
1.76
48854--48888
14
2.4
15
95
4
63
11
22
22
42
1.85

Tables:   1

The End!