Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017035.1 Corchorus olitorius cultivar O-4 contig17068, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46171

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
431--535
31
3.5
31
77
7
108
20
17
22
40
1.92
9410--9567
2
76.0
2
68
28
66
43
5
6
43
1.55
9410--9447
5
7.8
5
97
2
69
42
15
0
42
1.47
9394--9538
74
2.0
73
88
9
215
42
6
6
44
1.58
9484--9567
5
20.0
4
82
16
59
45
2
8
44
1.47
9410--9567
7
25.3
6
72
22
66
43
5
6
43
1.55
9704--9729
12
2.2
12
100
0
52
26
0
0
73
0.84
10278--10447
87
1.9
89
86
5
247
35
9
12
41
1.76
11430--11886
229
2.0
227
97
0
860
43
13
13
29
1.82
14404--14436
16
2.1
17
88
11
52
63
18
0
18
1.31
14794--14829
19
1.9
18
88
5
54
30
0
19
50
1.48
19141--19434
149
2.0
149
86
2
412
24
18
18
38
1.93
21654--21697
5
9.0
5
80
5
54
72
2
22
2
1.07
36812--36854
22
1.9
23
95
4
79
37
11
4
46
1.61
36817--36870
22
2.5
22
84
6
65
38
9
9
42
1.69
36875--36923
22
2.2
22
85
7
64
28
14
4
53
1.59
36905--37311
22
18.7
22
72
14
256
36
16
10
37
1.83
36946--37012
23
3.0
23
82
2
73
38
17
11
31
1.87
37107--37311
82
2.4
84
79
8
202
35
15
7
40
1.76
37432--37487
22
2.6
22
80
5
62
39
10
5
44
1.62
37438--37664
22
10.4
22
70
10
92
34
13
8
42
1.76
37411--37576
88
1.9
87
81
6
201
34
12
9
42
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
37504--37602
44
2.3
43
81
6
112
36
9
8
46
1.65
38012--39088
538
2.0
539
90
1
1687
34
14
17
33
1.90
39335--39376
21
2.0
21
86
9
59
16
0
35
47
1.47
40228--40269
21
2.0
21
86
9
59
16
0
35
47
1.47
41165--41206
21
2.0
21
90
0
66
40
16
21
21
1.91
41330--41636
152
2.0
152
93
0
524
30
21
21
26
1.98
42827--42902
33
2.4
30
84
8
89
28
30
9
31
1.88

Tables:   1

The End!