Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017036.1 Corchorus olitorius cultivar O-4 contig17069, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30105

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5865--5993
64
2.0
64
95
0
231
32
13
13
40
1.84
10799--10835
12
3.2
12
81
14
51
54
2
0
43
1.14
16628--16662
2
17.5
2
100
0
70
48
0
0
51
1.00
17163--17244
34
2.4
35
84
11
109
37
12
12
37
1.80
17161--17275
34
3.1
34
68
21
81
35
13
12
39
1.81
17405--17453
17
3.0
17
82
11
66
24
2
6
67
1.24
18375--18415
21
2.0
21
90
9
66
39
0
2
58
1.11
18601--18634
2
17.0
2
87
0
50
50
0
5
44
1.26
18943--19036
45
2.2
44
86
7
131
38
20
5
36
1.75
21732--21803
31
2.5
28
77
8
74
37
4
13
44
1.64

Tables:   1

The End!