Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017037.1 Corchorus olitorius cultivar O-4 contig17070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  19224

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--91
31
2.9
31
88
0
137
15
28
27
28
1.96
266--310
19
2.4
19
78
10
56
64
0
4
31
1.13
2339--2412
31
2.6
28
74
8
69
43
14
24
17
1.87
5777--5823
22
2.1
23
92
4
78
65
14
6
12
1.44
6028--6394
107
3.4
107
85
6
445
42
6
8
42
1.60
11755--11960
22
9.5
22
72
8
129
41
17
10
31
1.83
11982--12075
22
4.3
22
75
15
68
34
18
8
39
1.81
12100--12331
22
10.5
22
67
12
84
34
11
12
41
1.79
12188--12331
66
2.2
65
78
8
148
34
9
13
43
1.77
12528--12585
29
2.0
29
86
3
80
37
20
12
29
1.89
13450--13482
17
1.9
17
88
11
50
63
9
0
27
1.24
13829--13868
15
2.5
17
88
8
57
62
2
0
35
1.09
14674--14751
29
2.7
28
82
7
93
41
25
15
17
1.89
14708--14766
30
2.0
30
82
0
73
42
23
11
22
1.86
16180--16208
14
2.1
14
100
0
58
41
0
31
27
1.56

Tables:   1

The End!