Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017038.1 Corchorus olitorius cultivar O-4 contig17071, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  46390

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
9191--9220
12
2.5
12
100
0
60
40
13
20
26
1.89
17312--17366
27
2.0
27
85
7
74
43
5
3
47
1.44
21480--21535
28
2.0
28
96
0
103
26
23
14
35
1.93
22148--22299
22
6.5
22
74
12
142
24
20
15
40
1.90
29827--29892
29
2.2
29
97
2
123
24
10
40
24
1.86
30047--30080
17
2.0
17
88
0
50
32
5
8
52
1.56
30151--30379
56
4.1
56
83
4
277
29
15
33
21
1.94
30613--30659
21
2.2
22
88
3
69
14
8
27
48
1.73
34661--34686
13
2.0
13
100
0
52
30
23
0
46
1.53
37801--38081
107
2.6
107
90
1
431
40
8
7
42
1.64
39785--39814
12
2.5
12
88
0
51
40
43
0
16
1.48
40373--40429
27
2.1
27
93
3
96
21
29
17
31
1.96
40363--40429
28
2.4
28
87
7
102
22
31
16
29
1.96
45954--46121
78
2.2
77
90
3
257
33
13
1
51
1.49

Tables:   1

The End!