Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017042.1 Corchorus olitorius cultivar O-4 contig17075, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  101052

Tables:   1   

This is table  1  of  1  ( 37 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
8031--8120
45
2.1
43
83
8
112
41
22
4
32
1.74
9869--9907
15
2.9
13
82
17
53
53
0
0
46
1.00
9806--10137
166
2.0
165
85
8
449
36
10
9
44
1.70
10151--10188
19
2.0
20
85
15
53
28
5
2
63
1.30
10209--10240
6
5.3
6
100
0
64
50
34
0
15
1.45
10372--10525
22
7.0
22
78
8
143
35
10
17
36
1.84
10372--10525
67
2.3
66
85
3
211
35
10
17
36
1.84
10615--10771
22
7.2
21
72
14
88
37
8
18
35
1.81
10614--10771
44
3.6
42
73
13
131
37
8
18
35
1.82
10794--11048
22
11.6
23
73
15
132
41
8
14
34
1.77
11318--11424
23
4.7
23
78
5
101
38
10
14
36
1.81
11496--11582
45
1.9
45
83
4
113
34
11
16
37
1.84
11129--11623
22
22.6
22
67
13
107
39
10
15
34
1.82
11725--11780
22
2.6
21
75
10
60
39
5
14
41
1.68
13131--13159
1
29.0
1
100
0
58
100
0
0
0
0.00
20190--20219
7
4.1
7
95
4
51
83
0
16
0
0.65
25737--25775
2
19.5
2
100
0
78
0
0
48
51
1.00
31426--31462
13
2.8
13
87
0
56
16
43
8
32
1.77
31461--31542
39
2.1
39
88
4
121
41
17
12
29
1.85
33044--33101
31
1.9
31
89
3
91
32
10
27
29
1.90
34557--34937
190
2.0
190
100
0
762
28
15
19
35
1.93
36618--36652
11
3.2
11
83
0
52
77
17
5
0
0.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43428--43454
12
2.2
12
100
0
54
0
7
0
92
0.38
45474--45871
210
1.9
210
83
4
516
31
15
25
27
1.95
48604--48665
31
2.0
31
100
0
124
16
19
16
48
1.81
55239--55268
2
15.0
2
100
0
60
50
0
0
50
1.00
58114--58147
6
5.7
6
89
0
50
2
26
0
70
1.01
68646--68680
18
1.9
18
94
0
61
14
2
31
51
1.57
72910--72950
21
1.9
22
90
5
66
73
2
7
17
1.17
78501--78541
20
2.0
20
85
9
55
7
17
2
73
1.17
83010--83071
31
2.0
30
87
9
90
61
16
4
17
1.51
83160--83236
6
13.3
6
91
5
124
29
0
70
0
0.88
94842--94903
24
2.6
24
89
0
97
4
30
20
43
1.73
98360--98389
6
5.0
6
95
0
51
16
30
3
50
1.62
100420--100500
39
2.0
40
85
2
110
50
7
3
38
1.48
100491--100536
24
2.0
23
91
4
74
32
6
6
54
1.52
100723--100752
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!