Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017045.1 Corchorus olitorius cultivar O-4 contig17078, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48255

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1716--1744
15
2.0
15
93
6
51
68
0
0
31
0.89
4626--4705
39
2.1
39
95
0
142
26
15
2
56
1.52
8016--8053
11
3.5
11
89
10
51
39
0
2
57
1.12
18015--18156
55
2.6
55
100
0
284
45
22
8
23
1.79
25757--25886
65
2.0
65
98
0
251
36
16
10
36
1.83
27335--27366
14
2.3
14
94
0
55
15
6
15
62
1.51
33093--33124
16
2.0
16
100
0
64
68
0
31
0
0.90
38736--39728
439
2.2
436
81
6
1140
42
13
13
31
1.83
42921--42987
23
3.0
23
82
2
73
38
17
11
31
1.87
43056--43115
23
2.7
23
87
7
79
35
11
8
45
1.71
42871--43285
22
19.0
22
72
13
200
36
14
9
38
1.80
43144--43308
22
7.6
21
70
17
79
33
15
9
42
1.78
43411--43829
22
18.9
22
68
14
209
34
16
8
39
1.80
43677--43973
44
6.4
44
69
15
186
38
17
8
35
1.80
43842--44087
22
11.0
22
72
10
117
37
17
9
34
1.82
43925--44087
66
2.5
66
82
4
204
36
18
9
35
1.83
43911--44052
44
3.2
44
76
13
141
34
16
11
37
1.85
44252--44290
20
2.0
20
85
10
53
64
2
5
28
1.28
45505--45550
23
2.0
23
100
0
92
43
21
17
17
1.88
48218--48242
12
2.1
12
100
0
50
0
8
0
92
0.40

Tables:   1

The End!