Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017046.1 Corchorus olitorius cultivar O-4 contig17079, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52800

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6505--6529
2
12.5
2
100
0
50
48
0
0
52
1.00
13278--13329
7
7.4
7
91
0
77
26
40
3
28
1.74
15252--15320
34
2.0
34
91
5
113
39
14
8
37
1.77
17772--17808
19
1.9
19
94
0
65
51
5
13
29
1.63
22095--22152
10
5.6
10
82
13
73
0
1
10
87
0.60
22097--22151
23
2.4
23
93
0
92
0
1
9
89
0.57
22097--22152
1
56.0
1
78
0
58
0
1
8
89
0.56
27589--28630
437
2.4
434
83
5
1272
42
13
13
30
1.82
28593--28672
40
2.0
40
100
0
160
57
5
12
25
1.55
29221--29287
29
2.2
29
86
5
89
37
20
28
13
1.91
35299--35343
8
5.4
8
83
5
54
2
15
0
82
0.77
35299--35351
25
2.1
25
83
13
65
3
13
1
81
0.92
39691--39757
35
1.9
35
93
0
116
37
17
20
23
1.94
46000--46029
2
15.0
2
100
0
60
50
0
0
50
1.00
46369--46462
46
2.0
46
100
0
188
34
13
22
29
1.93

Tables:   1

The End!