Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001705.1 Corchorus olitorius cultivar O-4 contig01705, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5208
ACGTcount: A:0.30, C:0.16, G:0.17, T:0.36


Found at i:5145 original size:20 final size:21

Alignment explanation


    Indices: 5120--5160  Score: 75
    Period size: 20  Copynumber: 2.0  Consensus size: 21

       5110 TGAACAACAC

                                 
       5120 GCGCCGTTAAA-CCATTTTTT
          1 GCGCCGTTAAACCCATTTTTT

                                 
       5140 GCGCCGTTAAACCCATTTTTT
          1 GCGCCGTTAAACCCATTTTTT

       5161 TGCCTACGTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  20   11  0.55
  21    9  0.45

ACGTcount: A:0.20, C:0.27, G:0.15, T:0.39


Consensus pattern (21 bp):   
GCGCCGTTAAACCCATTTTTT

Done.