Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017050.1 Corchorus olitorius cultivar O-4 contig17083, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  51501

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
623--659
18
2.1
18
89
0
56
45
10
0
43
1.39
2526--2565
17
2.2
20
86
13
59
27
12
2
57
1.48
2846--2886
20
2.0
21
90
4
66
31
4
9
53
1.55
4571--4638
29
2.3
29
82
5
84
19
27
13
39
1.89
5425--5719
120
2.5
120
94
0
511
37
9
12
40
1.76
11163--11227
30
2.2
30
97
2
123
30
3
15
50
1.59
11163--11227
15
4.4
16
68
14
50
30
3
15
50
1.59
11283--11338
29
1.9
29
92
0
94
23
3
28
44
1.70
11804--11861
29
2.0
29
89
0
89
46
8
8
36
1.65
12269--12307
13
2.9
14
81
11
55
48
23
12
15
1.79
12540--12564
1
25.0
1
100
0
50
100
0
0
0
0.00
20508--20553
22
2.2
21
84
7
58
8
10
0
80
0.91
22055--22140
3
29.0
3
95
2
156
32
0
0
67
0.91
39214--39325
58
1.9
58
88
0
170
47
13
16
22
1.82
49005--49052
25
1.9
25
91
0
78
50
18
12
18
1.78
49022--49056
18
1.9
18
94
0
61
45
22
11
20
1.82

Tables:   1

The End!