genome.fa.s17051.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017051.1 Corchorus olitorius cultivar O-4 contig17084, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  185084

Tables:   1   

This is table  1  of  1  ( 98 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
270--316	17	2.8	17	90	3	78	36	29	0	34	1.58
270--319	8	6.1	8	90	4	73	38	30	0	32	1.58
1420--1482	30	2.1	30	84	0	81	15	25	14	44	1.84
1459--1505	24	2.0	24	91	0	76	14	23	23	38	1.92
4377--4455	38	2.0	40	85	7	108	17	11	18	51	1.75
5137--5184	25	1.9	25	86	0	69	35	18	10	35	1.85
5181--5581	78	4.9	75	73	16	281	31	16	15	35	1.91
5181--5581	41	9.9	40	75	15	299	31	16	15	35	1.91
6685--6861	93	1.9	93	92	2	302	38	7	16	37	1.77
7501--7548	21	2.3	21	85	0	60	39	12	20	27	1.89
7851--7892	12	3.4	12	84	12	50	80	7	4	7	1.00
10957--11014	21	2.8	20	80	15	64	46	1	48	3	1.29
11249--11342	45	2.2	43	88	7	138	39	22	3	35	1.70
12555--12592	20	1.9	20	100	0	76	42	7	13	36	1.73
13856--13908	27	2.0	27	88	7	81	43	9	3	43	1.55
14368--14401	17	1.9	18	94	5	61	41	8	20	29	1.82
14405--14480	22	3.5	21	74	15	64	38	11	10	39	1.77
14465--14525	22	2.7	23	72	7	63	39	9	9	40	1.72
14405--14525	44	2.8	43	80	6	109	38	10	11	39	1.77
16275--16408	22	6.2	22	75	12	127	38	9	14	37	1.79
16490--16555	32	2.1	32	91	0	105	25	18	16	39	1.91
24468--24546	31	2.5	31	85	0	113	34	17	13	34	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45370--45416	15	3.0	15	81	6	58	46	0	0	53	1.00
45833--45907	30	2.4	33	76	19	95	44	8	1	46	1.41
45842--45906	30	2.2	30	88	5	96	44	7	1	46	1.41
45855--45919	30	2.2	30	81	10	71	50	7	0	41	1.31
49451--49525	31	2.5	29	78	4	87	41	12	24	22	1.87
50364--50511	76	1.9	76	95	0	269	41	16	3	39	1.65
50817--50854	16	2.6	14	91	8	58	0	2	15	81	0.80
52467--52874	63	6.6	61	79	9	391	38	9	18	34	1.83
52467--52869	125	3.3	122	79	8	422	38	9	18	33	1.82
52871--52950	32	2.5	32	87	4	108	22	18	23	35	1.96
58920--59030	51	2.2	51	83	8	145	45	15	18	21	1.86
61460--61585	46	2.8	46	77	7	132	37	11	19	32	1.87
61462--61646	22	8.3	22	72	10	128	36	9	19	34	1.85
61462--61646	44	4.2	43	75	9	149	36	9	19	34	1.85
61832--61902	29	2.4	31	88	4	101	39	18	28	14	1.89
62108--62231	44	2.8	42	78	11	133	35	8	17	38	1.80
62108--62231	22	5.6	22	81	7	119	35	8	17	38	1.80
62246--62297	22	2.4	22	83	6	61	38	11	17	32	1.85
62260--62316	22	2.6	21	83	8	62	31	12	22	33	1.91
63579--63724	22	6.6	22	72	7	89	37	10	15	36	1.82
66714--66827	55	2.1	55	91	0	183	29	23	10	35	1.89
73011--73268	130	2.0	132	88	1	385	36	20	13	29	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
77059--77092	14	2.4	14	95	0	59	23	8	0	67	1.18
77120--77150	15	2.1	15	100	0	62	19	6	12	61	1.53
77995--78019	5	5.0	5	100	0	50	20	0	0	80	0.72
82053--82087	2	17.0	2	94	5	61	48	2	0	48	1.16
83050--83145	45	2.2	42	81	7	113	38	5	19	36	1.75
83575--83621	23	2.0	23	95	0	85	34	21	8	36	1.84
86434--86487	12	4.5	12	78	0	63	5	11	57	25	1.55
86436--86487	24	2.2	24	89	0	77	5	11	57	25	1.55
92164--92225	25	2.5	25	86	2	81	29	14	19	37	1.91
97522--97641	60	2.0	60	96	0	222	30	18	16	35	1.93
98843--98881	13	3.0	13	85	7	53	51	23	10	15	1.73
98832--98877	13	3.3	13	82	11	56	43	28	10	17	1.82
100144--100200	3	19.0	3	96	0	105	64	1	0	33	1.04
104132--104221	43	2.1	43	97	2	173	16	11	8	63	1.51
109931--109961	7	4.4	7	95	0	53	12	45	9	32	1.75
111408--111453	24	1.9	24	100	0	92	36	10	8	43	1.71
111915--112311	219	1.8	219	97	0	758	40	14	18	26	1.89
112304--112336	2	16.5	2	100	0	66	48	0	0	51	1.00
112963--113098	59	2.3	60	83	1	175	33	16	16	33	1.92
112963--113127	59	2.8	60	81	1	170	36	15	15	32	1.89
113173--113245	32	2.3	32	90	2	121	20	21	20	36	1.95
113207--113373	60	2.8	60	85	3	212	32	14	15	36	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
121801--121830	2	15.0	2	92	0	51	46	0	0	53	1.00
124134--124473	176	2.0	167	84	7	441	38	9	8	43	1.68
124692--124889	22	8.9	22	75	6	166	36	10	16	36	1.82
124692--124842	66	2.3	66	88	2	214	37	11	15	35	1.83
124926--125815	22	40.4	22	65	16	206	37	9	17	35	1.83
125328--125815	22	22.3	22	71	9	221	38	10	16	34	1.83
129021--129188	21	7.8	21	74	12	85	39	11	14	35	1.82
129092--129188	43	2.3	43	80	7	108	36	13	13	37	1.84
129137--129188	22	2.4	21	87	3	68	38	13	11	36	1.81
129245--129290	16	3.0	14	82	17	56	52	0	4	43	1.21
129246--129272	2	13.5	2	100	0	54	51	0	0	48	1.00
129254--129302	24	2.1	24	81	7	57	51	2	4	42	1.32
131951--132005	22	2.6	21	77	5	56	47	9	21	21	1.78
131966--132156	65	2.9	65	78	8	165	41	8	13	36	1.76
131971--132156	22	8.5	22	77	8	157	40	9	13	36	1.77
135835--135877	21	2.0	21	95	0	77	11	4	48	34	1.60
139691--139734	21	2.1	21	91	0	70	13	43	9	34	1.76
139834--139858	12	2.1	12	100	0	50	40	16	20	24	1.91
139970--140046	7	10.9	7	76	18	52	46	0	1	51	1.09
139961--139995	18	1.9	18	94	0	61	37	2	0	60	1.12
139962--140045	10	8.7	10	75	12	59	45	1	1	52	1.16
139978--140023	16	3.1	15	73	17	51	41	0	2	56	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
140008--140046	17	2.3	17	95	0	69	56	0	0	43	0.99
140086--140130	21	2.1	21	83	0	54	35	11	40	13	1.80
141146--141181	2	18.0	2	94	0	63	52	0	47	0	1.00
146851--146885	12	2.8	13	91	8	63	37	14	22	25	1.92
147873--147927	10	5.5	10	93	0	83	34	10	16	38	1.84
147926--147989	20	3.2	20	77	16	55	39	15	20	25	1.92
154324--154384	32	1.9	32	96	0	113	26	18	6	49	1.71
156739--156855	57	2.0	58	95	3	209	18	22	16	42	1.89
160640--160725	27	3.2	27	91	0	145	15	22	20	41	1.89
181708--181736	15	2.0	15	93	6	51	37	13	0	48	1.43

Tables:   1

The End!