Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017053.1 Corchorus olitorius cultivar O-4 contig17086, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9409
ACGTcount: A:0.34, C:0.17, G:0.14, T:0.35


Found at i:3758 original size:2 final size:2

Alignment explanation


    Indices: 3751--3787  Score: 74
    Period size: 2  Copynumber: 18.5  Consensus size: 2

       3741 TCTCCATTCA

                                                                   
       3751 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A

       3788 CTTCTAATTT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   35  1.00

ACGTcount: A:0.51, C:0.00, G:0.00, T:0.49


Consensus pattern (2 bp):   
AT

Found at i:6442 original size:14 final size:14

Alignment explanation


    Indices: 6423--6449  Score: 54
    Period size: 14  Copynumber: 1.9  Consensus size: 14

       6413 TGAATTGCTT

                          
       6423 TTAAGAAATGCGAG
          1 TTAAGAAATGCGAG

                         
       6437 TTAAGAAATGCGA
          1 TTAAGAAATGCGA

       6450 CTAATCTTAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   13  1.00

ACGTcount: A:0.44, C:0.07, G:0.26, T:0.22


Consensus pattern (14 bp):   
TTAAGAAATGCGAG
Done.