Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017055.1 Corchorus olitorius cultivar O-4 contig17088, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 15002
ACGTcount: A:0.36, C:0.16, G:0.19, T:0.30
Found at i:307 original size:25 final size:24
Alignment explanation
Indices: 273--319 Score: 76
Period size: 25 Copynumber: 1.9 Consensus size: 24
263 ACGTTTGCAC
*
273 AAATATCTAAGAATTTGAATTAAAA
1 AAATACCTAAGAATTT-AATTAAAA
298 AAATACCTAAGAATTTAATTAA
1 AAATACCTAAGAATTTAATTAA
320 TGTAAGTATT
Statistics
Matches: 21, Mismatches: 1, Indels: 1
0.91 0.04 0.04
Matches are distributed among these distances:
24 6 0.29
25 15 0.71
ACGTcount: A:0.55, C:0.06, G:0.06, T:0.32
Consensus pattern (24 bp):
AAATACCTAAGAATTTAATTAAAA
Found at i:365 original size:39 final size:40
Alignment explanation
Indices: 310--390 Score: 128
Period size: 39 Copynumber: 2.0 Consensus size: 40
300 ATACCTAAGA
*
310 ATTTAATTAATGTAAGTATTTCAGTTATTA-TAATATTAC
1 ATTTAATTAATATAAGTATTTCAGTTATTATTAATATTAC
* *
349 ATTTAATTAATATAAGTATTTTAGTTATTATTTATATTAC
1 ATTTAATTAATATAAGTATTTCAGTTATTATTAATATTAC
389 AT
1 AT
391 CAGAATTAAA
Statistics
Matches: 38, Mismatches: 3, Indels: 1
0.90 0.07 0.02
Matches are distributed among these distances:
39 28 0.74
40 10 0.26
ACGTcount: A:0.38, C:0.04, G:0.06, T:0.52
Consensus pattern (40 bp):
ATTTAATTAATATAAGTATTTCAGTTATTATTAATATTAC
Found at i:652 original size:6 final size:6
Alignment explanation
Indices: 634--681 Score: 87
Period size: 6 Copynumber: 7.8 Consensus size: 6
624 GTTTAGACTT
634 ATATAG TATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATA
1 ATATAG -ATATAG ATATAG ATATAG ATATAG ATATAG ATATAG ATATA
682 TGGCTTAGAA
Statistics
Matches: 41, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
6 35 0.85
7 6 0.15
ACGTcount: A:0.50, C:0.00, G:0.15, T:0.35
Consensus pattern (6 bp):
ATATAG
Found at i:2839 original size:140 final size:140
Alignment explanation
Indices: 2507--2907 Score: 777
Period size: 140 Copynumber: 2.9 Consensus size: 140
2497 AACATCATTC
*
2507 AGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGACGATCTTACTTACAAAAAATGAAT
1 AGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGACGATCTTACTTACAGAAAATGAAT
2572 AGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACC-AAAAAATATACAT
66 AGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCAAAAAAATATACAT
2636 GAGACTTAGA
131 GAGACTTAGA
2646 AGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGACGATCTTACTTACAGAAAATGAAT
1 AGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGACGATCTTACTTACAGAAAATGAAT
2711 AGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCAAAAAAATATACAT
66 AGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCAAAAAAATATACAT
2776 GAGACTTAGA
131 GAGACTTAGA
2786 AGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGACGATCTTACTTACAGAAAATGAAT
1 AGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGACGATCTTACTTACAGAAAATGAAT
*
2851 AGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCTAGGAACCAAAAAA
66 AGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCAAAAAA
2908 CAGAAAATGA
Statistics
Matches: 259, Mismatches: 2, Indels: 1
0.99 0.01 0.00
Matches are distributed among these distances:
139 115 0.44
140 144 0.56
ACGTcount: A:0.44, C:0.11, G:0.18, T:0.26
Consensus pattern (140 bp):
AGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGACGATCTTACTTACAGAAAATGAAT
AGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCAAAAAAATATACAT
GAGACTTAGA
Found at i:2918 original size:69 final size:69
Alignment explanation
Indices: 2838--2976 Score: 269
Period size: 69 Copynumber: 2.0 Consensus size: 69
2828 GATCTTACTT
*
2838 ACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCTAGGAACCA
1 ACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCA
2903 AAAA
66 AAAA
2907 ACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCA
1 ACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCA
2972 AAAA
66 AAAA
2976 A
1 A
2977 ATATACATGA
Statistics
Matches: 69, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
69 69 1.00
ACGTcount: A:0.48, C:0.12, G:0.16, T:0.24
Consensus pattern (69 bp):
ACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCA
AAAA
Found at i:3058 original size:209 final size:209
Alignment explanation
Indices: 2698--3116 Score: 820
Period size: 209 Copynumber: 2.0 Consensus size: 209
2688 GATCTTACTT
2698 ACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCA
1 ACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCA
2763 AAAAAATATACATGAGACTTAGAAGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGAC
66 AAAAAATATACATGAGACTTAGAAGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGAC
2828 GATCTTACTTACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCC
131 GATCTTACTTACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCC
2893 CTAGGAACCAAAAA
196 CTAGGAACCAAAAA
2907 ACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCA
1 ACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCA
*
2972 AAAAAATATACATGAGACTTGGAAGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGAC
66 AAAAAATATACATGAGACTTAGAAGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGAC
*
3037 GATCTTCCTTACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCC
131 GATCTTACTTACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCC
3102 CTAGGAACCAAAAA
196 CTAGGAACCAAAAA
3116 A
1 A
3117 ATATACATGA
Statistics
Matches: 208, Mismatches: 2, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
209 208 1.00
ACGTcount: A:0.45, C:0.12, G:0.18, T:0.25
Consensus pattern (209 bp):
ACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCCCCAGGAACCA
AAAAAATATACATGAGACTTAGAAGAGAAAAGCAGAATTATTAGTGTAATTTATCAGGGGAAGAC
GATCTTACTTACAGAAAATGAATAGAGAAATGTTTTCAAGGAAATTGTCTAATTAGATAAATTCC
CTAGGAACCAAAAA
Found at i:5452 original size:2 final size:2
Alignment explanation
Indices: 5445--5491 Score: 78
Period size: 2 Copynumber: 24.0 Consensus size: 2
5435 TAGATCAAGA
*
5445 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT A- AT AT AT AT GT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
5486 AT AT AT
1 AT AT AT
5492 CCTACTATTC
Statistics
Matches: 42, Mismatches: 2, Indels: 2
0.91 0.04 0.04
Matches are distributed among these distances:
1 1 0.02
2 41 0.98
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7648 original size:23 final size:23
Alignment explanation
Indices: 7622--7692 Score: 54
Period size: 23 Copynumber: 2.8 Consensus size: 23
7612 CTAAAAATTG
7622 GTAATTTGGTAAGTAAAAAAAAA
1 GTAATTTGGTAAGTAAAAAAAAA
*
7645 GTAAAATTAAAATTGGTAATTAAAAAAAAAA
1 GT--AA-T----TTGGTAAGT-AAAAAAAAA
7676 G-AATTTGGTAAGTAAAA
1 GTAATTTGGTAAGTAAAA
7693 GAGTAAAAGT
Statistics
Matches: 38, Mismatches: 2, Indels: 17
0.67 0.04 0.30
Matches are distributed among these distances:
22 4 0.11
23 10 0.26
25 2 0.05
26 1 0.03
27 1 0.03
28 2 0.05
30 8 0.21
31 10 0.26
ACGTcount: A:0.58, C:0.00, G:0.15, T:0.27
Consensus pattern (23 bp):
GTAATTTGGTAAGTAAAAAAAAA
Found at i:7669 original size:27 final size:26
Alignment explanation
Indices: 7639--7715 Score: 79
Period size: 27 Copynumber: 3.0 Consensus size: 26
7629 GGTAAGTAAA
7639 AAAAAAGTAAAATTAAAATTGGTAATT
1 AAAAAAGTAAAA-TAAAATTGGTAATT
* * *
7666 AAAAAA--AAAA-GAATTTGGTAAGT
1 AAAAAAGTAAAATAAAATTGGTAATT
*
7689 AAAAGAGTAAAAGTAAAATTGGTAATT
1 AAAAAAGTAAAA-TAAAATTGGTAATT
7716 TGGTAAGTAA
Statistics
Matches: 39, Mismatches: 7, Indels: 8
0.72 0.13 0.15
Matches are distributed among these distances:
23 15 0.38
25 8 0.21
27 16 0.41
ACGTcount: A:0.58, C:0.00, G:0.16, T:0.26
Consensus pattern (26 bp):
AAAAAAGTAAAATAAAATTGGTAATT
Found at i:7670 original size:88 final size:87
Alignment explanation
Indices: 7615--7807 Score: 244
Period size: 88 Copynumber: 2.1 Consensus size: 87
7605 CGGTTATCTA
*
7615 AAAATTGGTAATTTGGTAAGTAAAAAAAAAGTAAAATTAAAATTGGTAATT-AAAAAAAAAAGAA
1 AAAATTGGTAATTTGGTAAGTAAAAAAAAAGTAAAAGTAAAATTGGTAATTAAAAAAAAAAAGAA
** *
7679 TTTGGTAAGTAAAAGAGTAAAAGT
66 GATGGTAAGT--AAGAGTAAAACT
*
7703 AAAATTGGTAATTTGGTAAGTAAAAAAAAAGTAAAAGTAAAATTGGTAATTAAAAAAAAAGAGAA
1 AAAATTGGTAATTTGGTAAGTAAAAAAAAAGTAAAAGTAAAATTGGTAATTAAAAAAAAAAAGAA
** *
7768 TTTGGTAAGTAAAAAAAGAGTAAAAGT
66 GATGGTAAGT-----AAGAGTAAAACT
7795 AAAATTGGTAATT
1 AAAATTGGTAATT
7808 AAAAAGTAAA
Statistics
Matches: 99, Mismatches: 2, Indels: 4
0.94 0.02 0.04
Matches are distributed among these distances:
88 50 0.51
89 22 0.22
92 27 0.27
ACGTcount: A:0.56, C:0.00, G:0.18, T:0.26
Consensus pattern (87 bp):
AAAATTGGTAATTTGGTAAGTAAAAAAAAAGTAAAAGTAAAATTGGTAATTAAAAAAAAAAAGAA
GATGGTAAGTAAGAGTAAAACT
Found at i:7745 original size:38 final size:35
Alignment explanation
Indices: 7677--7753 Score: 118
Period size: 38 Copynumber: 2.1 Consensus size: 35
7667 AAAAAAAAAG
*
7677 AATTTGGTAAGTAAAAGAGTAAAAGTAAAATTGGT
1 AATTTGGTAAGTAAAAAAGTAAAAGTAAAATTGGT
7712 AATTTGGTAAGTAAAAAAAAAGTAAAAGTAAAATTGGT
1 AATTTGGTAAGT---AAAAAAGTAAAAGTAAAATTGGT
7750 AATT
1 AATT
7754 AAAAAAAAAG
Statistics
Matches: 38, Mismatches: 1, Indels: 3
0.90 0.02 0.07
Matches are distributed among these distances:
35 12 0.32
38 26 0.68
ACGTcount: A:0.52, C:0.00, G:0.19, T:0.29
Consensus pattern (35 bp):
AATTTGGTAAGTAAAAAAGTAAAAGTAAAATTGGT
Found at i:7774 original size:142 final size:137
Alignment explanation
Indices: 7624--8497 Score: 397
Period size: 131 Copynumber: 6.6 Consensus size: 137
7614 AAAAATTGGT
* *
7624 AATTTGGTAAGTAAAAAAAAAGTAAAATTAAAATTGGTAATTAAAAAAAAAAGAATTTGGTAAGT
1 AATTTGGTAA-T-AAAAAAAAGTAAAAGTAAAATTAGTAATT-AAAAAAAAA-AATTTGGTAAGT
*
7689 AAAAGAGTAAAAGTAAAATTGGTAATTTGGTAAGTAAAAAAAAAGTAAAAGTAAAATTGGTAATT
62 AAAAGAGTAAAAGTAAAATTGGTAATTTGGTAAGT-AAAAAAGAGTAAAAGTAAAATTGGTAATT
7754 AAAAAAAAAGAG
126 AAAAAAAAAGAG
* **
7766 AATTTGGTAAGTAAAAAAAGAGTAAAAGTAAAATTGGTAATTAAAAAGTAAAA-TTGGTAAGTAA
1 AATTTGGTAA-TAAAAAAA-AGTAAAAGTAAAATTAGTAATTAAAAAAAAAAATTTGGTAAGT-A
**
7830 AAAGAATTTGGTAATTAAAAAAGAATTAAAAAGG-AATTTGGTAAGT--AAAAGAGTAAAAGTAA
63 AAAG-A----GTAA--AAGTAA-AATT-----GGTAATTTGGTAAGTAAAAAAGAGTAAAAGTAA
7892 AATTGGTAATT--AAAAAAA-AG
115 AATTGGTAATTAAAAAAAAAGAG
* ** *
7912 AATTTGGTAATTAAAGGAA-TAAAAGTAAAATTAGTAATT---AAAAAAAATTTGGTAATTAAAA
1 AATTTGGTAATAAAAAAAAGTAAAAGTAAAATTAGTAATTAAAAAAAAAAATTTGGTAAGTAAAA
*
7973 GAGTAAAAGTAAAATTAGTAA--T--TAA--AAAAAA-AG---AA-T----TTGGTAATTAAAAG
66 GAGTAAAAGTAAAATTGGTAATTTGGTAAGTAAAAAAGAGTAAAAGTAAAATTGGTAATTAAAA-
8023 AGTAAAAGTA-
130 A--AAAAG-AG
* * * * ** * ** * *
8033 AAATTGGTAATTAAAAAAAA--AGAAG--AATTTGGTAATTAAAAGAGTAAAA-GT-AAAATTAG
1 AATTTGGTAA-TAAAAAAAAGTAAAAGTAAAATTAGTAATTAAAA-AAAAAAATTTGGTAAGTAA
* * * * *
8092 TA-ATTAAAA--AAAA--AG-AATTTGGTAA-AAAAAAAGAGTGAAAGTAAAATTGG---TT--A
64 AAGAGTAAAAGTAAAATTGGTAATTTGGTAAGTAAAAAAGAGTAAAAGTAAAATTGGTAATTAAA
8145 AAAAAA-AG
129 AAAAAAGAG
* *
8153 AATTTGGTAAGT--AAAAGAGTAAAAAAGTAAAA-AAG-AATTTGAAGAGTAAAAGTAAAA-TTG
1 AATTTGGTAA-TAAAAAAAAGT--AAAAGTAAAATTAGTAA-TT-AA-A--AAAA--AAAATTTG
* * *
8213 GTAA-TTAAA-A--AAAAG---AA---G-AATTTGGTAA-T-TAAAAGAGTAAAAGTAAAATTAG
56 GTAAGTAAAAGAGTAAAAGTAAAATTGGTAATTTGGTAAGTAAAAAAGAGTAAAAGTAAAATTGG
8265 TAATTAAAAAAAAA-AG
121 TAATTAAAAAAAAAGAG
* * * * *
8281 AATTCGGTAA-AAAAAAGAGTAAAAGTAAAATTGGTAA--AGTAAAAAAGAATTTGGTAAGTAAA
1 AATTTGGTAATAAAAAAAAGTAAAAGTAAAATTAGTAATTA-AAAAAAAAAATTTGGTAAGTAAA
** * **
8343 AGAGTAAAAAGTAAAA-AAG-AATTTGGTAA-T-TAAAAGAGTAAAAGTAAAATTGGTAATTTTA
65 AGAGT-AAAAGTAAAATTGGTAATTTGGTAAGTAAAAAAGAGTAAAAGTAAAATTGGTAATTAAA
8404 AAAAAA-AG
129 AAAAAAGAG
* * * *
8412 AATTTGGTAAT-TAAAAGAGTAAAAGTAAAATTAGTAATT--AAAAAAGAATTTGGTAATTAAAA
1 AATTTGGTAATAAAAAAAAGTAAAAGTAAAATTAGTAATTAAAAAAAAAAATTTGGTAAGT--AA
*
8474 AAGGAGTAAAAGTAAAATTTGTAA
64 AA-GAGTAAAAGTAAAATTGGTAA
8498 GTAAAAAGAA
Statistics
Matches: 577, Mismatches: 65, Indels: 188
0.70 0.08 0.23
Matches are distributed among these distances:
115 11 0.02
116 2 0.00
117 3 0.01
118 10 0.02
119 15 0.03
120 31 0.05
121 32 0.06
122 23 0.04
123 32 0.06
124 28 0.05
125 4 0.01
126 25 0.04
127 3 0.01
128 38 0.07
129 8 0.01
130 18 0.03
131 81 0.14
132 18 0.03
133 9 0.02
134 2 0.00
135 4 0.01
139 10 0.02
140 18 0.03
141 23 0.04
142 33 0.06
143 19 0.03
144 1 0.00
145 9 0.02
146 12 0.02
147 11 0.02
148 4 0.01
149 26 0.05
152 12 0.02
153 2 0.00
ACGTcount: A:0.58, C:0.00, G:0.17, T:0.25
Consensus pattern (137 bp):
AATTTGGTAATAAAAAAAAGTAAAAGTAAAATTAGTAATTAAAAAAAAAAATTTGGTAAGTAAAA
GAGTAAAAGTAAAATTGGTAATTTGGTAAGTAAAAAAGAGTAAAAGTAAAATTGGTAATTAAAAA
AAAAGAG
Found at i:7814 original size:20 final size:20
Alignment explanation
Indices: 7789--7850 Score: 92
Period size: 20 Copynumber: 3.2 Consensus size: 20
7779 AAAAAAGAGT
7789 AAAAGTAAAATTGGTAATTA
1 AAAAGTAAAATTGGTAATTA
*
7809 AAAAGTAAAATTGGTAAGTA
1 AAAAGTAAAATTGGTAATTA
*
7829 AAAAG--AATTTGGTAATTA
1 AAAAGTAAAATTGGTAATTA
7847 AAAA
1 AAAA
7851 AGAATTAAAA
Statistics
Matches: 39, Mismatches: 3, Indels: 2
0.89 0.07 0.05
Matches are distributed among these distances:
18 15 0.38
20 24 0.62
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.27
Consensus pattern (20 bp):
AAAAGTAAAATTGGTAATTA
Found at i:7832 original size:101 final size:100
Alignment explanation
Indices: 7727--8524 Score: 505
Period size: 101 Copynumber: 8.1 Consensus size: 100
7717 GGTAAGTAAA
7727 AAAAAAGTAAAAGTAAAATTGGTAATTAAAAAAAAAGAGAATTTGGTAAGTAAAAAAAGAGTAAA
1 AAAAAAGTAAAAGTAAAATTGGTAATTAAAAAAAAA-AGAATTTGGTAAGT--AAAAAGAGTAAA
* ** *
7792 AGTAAAATTGGTAATTAAAAAGTAA-AA-TTGGTAAGT
63 AGTAAAATTAGTAATTAAAAAAAAAGAATTTGGTAATT
7828 -AAAAAG---AA-T----TTGGTAATTAAAAAAGAATTAAAAAGGAATTTGGTAAGT-AAAAGAG
1 AAAAAAGTAAAAGTAAAATTGGTAATT---AAA-AA--AAAAA-GAATTTGGTAAGTAAAAAGAG
*
7883 TAAAAGTAAAATTGGTAATT-AAAAAAAAGAATTTGGTAATT
59 TAAAAGTAAAATTAGTAATTAAAAAAAAAGAATTTGGTAATT
* * *
7924 AAAGGAA-TAAAAGTAAAATTAGTAATT----AAAAAA-AATTTGGTAA-TTAAAAGAGTAAAAG
1 AAA-AAAGTAAAAGTAAAATTGGTAATTAAAAAAAAAAGAATTTGGTAAGTAAAAAGAGTAAAAG
7982 TAAAATTAGTAATTAAAAAAAAAGAATTTGGTAATT
65 TAAAATTAGTAATTAAAAAAAAAGAATTTGGTAATT
* *
8018 AAAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAAGAAGAATTTGGTAA-TTAAAAGAGTAAAA
1 AAAAAAGTAAAAGTAAAATTGGTAATT-AAAAAAAA-AAGAATTTGGTAAGTAAAAAGAGTAAAA
**
8082 GTAAAATTAGTAATTAAAAAAAAAGAATTTGGTAAAA
64 GTAAAATTAGTAATTAAAAAAAAAGAATTTGGTAATT
*
8119 AAAAAGAGTGAAAGTAAAATTGG---TT--AAAAAAAAGAATTTGGTAAGT-AAAAGAGTAAAAA
1 AAAAA-AGTAAAAGTAAAATTGGTAATTAAAAAAAAAAGAATTTGGTAAGTAAAAAGAGT--AAA
* ** *
8178 AGTAAAA-AAG-AATTTGAAGAGTAAAAGTAAAATTGGTAATT
63 AGTAAAATTAGTAA-TT-AA-AAAAAAAG--AATTTGGTAATT
* * * * *
8219 AAAAAA--AAGAAG--AATTTGGTAATTAAAAGAGTAAAAGTAAAATTAGTAATTAAAAA-A--A
1 AAAAAAGTAA-AAGTAAAATTGGTAATTAAAA-A-AAAAAG--AATTTGGTAAGTAAAAAGAGTA
* ** * *
8277 AAAG---AATTCGGTAAAAAAAAGAGTAAAAGTAAAATTGGTAAAGT
61 AAAGTAAAATT-AGTAATTAAAA-A--AAAAG--AATTTGGT-AATT
* *
8321 AAAAAAG-AATTTGGTAAGTAAAA--GAGTAA--AAAGTAAAAAAGAATTTGGTAA-TTAAAAGA
1 AAAAAAGTAA------AAGTAAAATTG-GTAATTAAA-AAAAAAAGAATTTGGTAAGTAAAAAGA
* *
8380 GTAAAAGTAAAATTGGTAATTTTAAAAAAAAGAATTTGGTAATT
58 GTAAAAGTAAAATTAGTAA-TTAAAAAAAAAGAATTTGGTAATT
* * *
8424 AAAAGAGTAAAAGTAAAATTAGTAATT----AAAAAAGAATTTGGTAATTAAAAAAGGAGTAAAA
1 AAAAAAGTAAAAGTAAAATTGGTAATTAAAAAAAAAAGAATTTGGTAAGT-AAAAA-GAGTAAAA
* *
8485 GTAAAATTTGTAAGT----AAAAAGAATTTGGTAATT
64 GTAAAATTAGTAATTAAAAAAAAAGAATTTGGTAATT
8518 AAAAAAG
1 AAAAAAG
8525 AATCAATAAA
Statistics
Matches: 566, Mismatches: 50, Indels: 169
0.72 0.06 0.22
Matches are distributed among these distances:
92 10 0.02
93 37 0.07
94 73 0.13
95 60 0.11
96 45 0.08
97 20 0.04
98 44 0.08
99 35 0.06
100 25 0.04
101 88 0.16
102 26 0.05
103 21 0.04
104 18 0.03
105 18 0.03
106 19 0.03
107 4 0.01
108 10 0.02
109 11 0.02
110 2 0.00
ACGTcount: A:0.58, C:0.00, G:0.17, T:0.25
Consensus pattern (100 bp):
AAAAAAGTAAAAGTAAAATTGGTAATTAAAAAAAAAAGAATTTGGTAAGTAAAAAGAGTAAAAGT
AAAATTAGTAATTAAAAAAAAAGAATTTGGTAATT
Found at i:7842 original size:18 final size:18
Alignment explanation
Indices: 7799--7856 Score: 71
Period size: 20 Copynumber: 3.1 Consensus size: 18
7789 AAAAGTAAAA
*
7799 TTGGTAATTAAAAAGTAAAA
1 TTGGTAATTAAAAAG--AAT
*
7819 TTGGTAAGTAAAAAGAAT
1 TTGGTAATTAAAAAGAAT
7837 TTGGTAATTAAAAAAGAAT
1 TTGGTAATT-AAAAAGAAT
7856 T
1 T
7857 AAAAAGGAAT
Statistics
Matches: 34, Mismatches: 3, Indels: 3
0.85 0.08 0.08
Matches are distributed among these distances:
18 10 0.29
19 10 0.29
20 14 0.41
ACGTcount: A:0.52, C:0.00, G:0.17, T:0.31
Consensus pattern (18 bp):
TTGGTAATTAAAAAGAAT
Found at i:7910 original size:49 final size:48
Alignment explanation
Indices: 7712--8521 Score: 473
Period size: 50 Copynumber: 16.3 Consensus size: 48
7702 TAAAATTGGT
*
7712 AATTTGGTAAGTAAAAAAAAAGTAAAAGTAAAATTGGTAATTAAAAAAAAAGAG
1 AATTTGGTAAGT---AAAAGAGTAAAAGTAAAATTGGTAATT--AAAAAAA-AG
*
7766 AATTTGGTAAGTAAAAAAAGAGTAAAAGTAAAATTGGTAATTAAAAAGTAA-
1 AATTTGGTAAGT---AAAAGAGTAAAAGTAAAATTGGTAATTAAAAA-AAAG
** *** *
7817 AA-TTGGTAAGTAAAA-AG-AATTTGGTAATTAAAAAAG-AATT--AAAAAGG
1 AATTTGGTAAGTAAAAGAGTAA--AAGT-A--AAATTGGTAATTAAAAAAAAG
7864 AATTTGGTAAGTAAAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAG
1 AATTTGGTAAGTAAAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAG
* * * *
7912 AATTTGGTAATTAAAGGAATAAAAGTAAAATTAGTAATT--AAAAAA-
1 AATTTGGTAAGTAAAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAG
* *
7957 AATTTGGTAATTAAAAGAGTAAAAGTAAAATTAGTAATTAAAAAAAAAG
1 AATTTGGTAAGTAAAAGAGTAAAAGTAAAATTGGTAATT-AAAAAAAAG
*
8006 AATTTGGTAATTAAAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAAGAAG
1 AATTTGGTAAGTAAAAGAGTAAAAGTAAAATTGGTAATT---AAAAAA-AAG
* *
8058 AATTTGGTAATTAAAAGAGTAAAAGTAAAATTAGTAATTAAAAAAAAAG
1 AATTTGGTAAGTAAAAGAGTAAAAGTAAAATTGGTAATT-AAAAAAAAG
** *
8107 AATTTGGTAAAAAAAAAGAGTGAAAGTAAAATTGG---TTAAAAAAAAG
1 AATTTGGT-AAGTAAAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAG
** *
8153 AATTTGGTAAGTAAAAGAGTAAAAAAGTAAAA-AAG-AATTTGAAGAGTAAAAG
1 AATTTGGTAAGTAAAAGAGT--AAAAGTAAAATTGGTAA-TT-AA-A-AAAAAG
* *
8205 TAAAATTGGTAA-TTAAA-A--AAAAG-AAGAATTTGGTAATTAAAAGAGTAAAAG
1 --AATTTGGTAAGTAAAAGAGTAAAAGTAA-AA-TTGGTAATT-AAA-A--AAAAG
* * * * **
8256 TAAAATTAGTAATTAAAA-A--AAAA--AGAATTCGGTAAAAAAAAGAGTAAAAG
1 --AATTTGGTAAGTAAAAGAGTAAAAGTAAAATT-GGT-AATTAAA-A--AAAAG
* * *
8306 TAAAATTGGTAAAGTAAAAAAG-AATTTGGTAAGTAAAA--GAGTAA-AAAGTAAAAAAG
1 --AATTTGGT-AAGTAAAAGAGTAA------AAGTAAAATTG-GTAATTAA--AAAAAAG
*
8362 AATTTGGTAATTAAAAGAGTAAAAGTAAAATTGGTAATTTTAAAAAAAAG
1 AATTTGGTAAGTAAAAGAGTAAAAGTAAAATTGGTAA--TTAAAAAAAAG
* *
8412 AATTTGGTAATTAAAAGAGTAAAAGTAAAATTAGTAATT--AAAAAAG
1 AATTTGGTAAGTAAAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAG
* * *
8458 AATTTGGTAATTAAAAAAGGAGTAAAAGTAAAATTTGTAAGT---AAAAAG
1 AATTTGGTAAGT--AAAA-GAGTAAAAGTAAAATTGGTAATTAAAAAAAAG
*
8506 AATTTGGTAATTAAAA
1 AATTTGGTAAGTAAAA
8522 AAGAATCAAT
Statistics
Matches: 639, Mismatches: 54, Indels: 134
0.77 0.07 0.16
Matches are distributed among these distances:
45 53 0.08
46 54 0.08
47 25 0.04
48 102 0.16
49 86 0.13
50 121 0.19
51 38 0.06
52 65 0.10
53 16 0.03
54 59 0.09
56 5 0.01
57 3 0.00
58 4 0.01
59 5 0.01
61 3 0.00
ACGTcount: A:0.58, C:0.00, G:0.17, T:0.25
Consensus pattern (48 bp):
AATTTGGTAAGTAAAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAG
Found at i:7960 original size:17 final size:18
Alignment explanation
Indices: 7938--7972 Score: 54
Period size: 18 Copynumber: 2.0 Consensus size: 18
7928 GAATAAAAGT
7938 AAAA-TTAGTAATTAAAA
1 AAAATTTAGTAATTAAAA
*
7955 AAAATTTGGTAATTAAAA
1 AAAATTTAGTAATTAAAA
7973 GAGTAAAAGT
Statistics
Matches: 16, Mismatches: 1, Indels: 1
0.89 0.06 0.06
Matches are distributed among these distances:
17 4 0.25
18 12 0.75
ACGTcount: A:0.60, C:0.00, G:0.09, T:0.31
Consensus pattern (18 bp):
AAAATTTAGTAATTAAAA
Found at i:8223 original size:20 final size:22
Alignment explanation
Indices: 8200--8254 Score: 60
Period size: 22 Copynumber: 2.5 Consensus size: 22
8190 TTTGAAGAGT
8200 AAAAGTAAAA-TTGGTAATTAAAA
1 AAAAGTAAAATTTGGTAATT--AA
8223 AAAAG-AAGAATTTGGTAATTAA
1 AAAAGTAA-AATTTGGTAATTAA
*
8245 AAGAGTAAAA
1 AAAAGTAAAA
8255 GTAAAATTAG
Statistics
Matches: 28, Mismatches: 1, Indels: 7
0.78 0.03 0.19
Matches are distributed among these distances:
22 10 0.36
23 9 0.32
24 9 0.32
ACGTcount: A:0.60, C:0.00, G:0.16, T:0.24
Consensus pattern (22 bp):
AAAAGTAAAATTTGGTAATTAA
Found at i:8242 original size:24 final size:24
Alignment explanation
Indices: 8210--8290 Score: 78
Period size: 23 Copynumber: 3.3 Consensus size: 24
8200 AAAAGTAAAA
8210 TTGGTAATTAAAAAAAAGAAGAAT
1 TTGGTAATTAAAAAAAAGAAGAAT
8234 TTGGTAATTAAAAGAGTAAAAGTAA-AA-
1 TTGGTAATT-AAA-A--AAAAG-AAGAAT
*
8261 TTAGTAATTAAAAAAAA-AAGAAT
1 TTGGTAATTAAAAAAAAGAAGAAT
*
8284 TCGGTAA
1 TTGGTAA
8291 AAAAAAGAGT
Statistics
Matches: 47, Mismatches: 3, Indels: 15
0.72 0.05 0.23
Matches are distributed among these distances:
21 2 0.04
22 2 0.04
23 9 0.19
24 9 0.19
25 4 0.09
26 4 0.09
27 8 0.17
28 7 0.15
29 2 0.04
ACGTcount: A:0.57, C:0.01, G:0.16, T:0.26
Consensus pattern (24 bp):
TTGGTAATTAAAAAAAAGAAGAAT
Found at i:8249 original size:173 final size:175
Alignment explanation
Indices: 8019--8521 Score: 754
Period size: 173 Copynumber: 2.9 Consensus size: 175
8009 TTGGTAATTA
8019 AAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAAGAAGAATTTGGTAATTAAAAGAGTAAAAGT
1 AAAGAGTAAAAGTAAAATTGGTAATT-AAAAAAAAGAAGAATTTGGTAATTAAAAGAGTAAAAGT
*
8084 AAAATTAGTAATTAAAAAAAAAGAATTTGGTAAAAAAAAAGAGTGAAAGTAAAATTGGTTAA-AA
65 AAAATTAGTAATTAAAAAAAAAGAATTTGGTAAAAAAAAAGAGTAAAAGTAAAATTGGTTAAGAA
8148 AAAAGAATTTGGTAAGTAAAAGAGTAAAAAAGTAAAAAAGAATTT-G
130 AAAAGAATTTGGTAAGTAAAAGAGT-AAAAAGTAAAAAAGAATTTGG
8194 -AAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAGAAGAATTTGGTAATTAAAAGAGTAAAAGTA
1 AAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAGAAGAATTTGGTAATTAAAAGAGTAAAAGTA
* *
8258 AAATTAGTAATTAAAAAAAAAAGAATTCGGT-AAAAAAAAGAGTAAAAGTAAAATTGGTAAAGTA
66 AAATTAGTAATT-AAAAAAAAAGAATTTGGTAAAAAAAAAGAGTAAAAGTAAAATTGGTTAAG-A
8322 AAAAAGAATTTGGTAAGTAAAAGAGTAAAAAGTAAAAAAGAATTTGG
129 AAAAAGAATTTGGTAAGTAAAAGAGTAAAAAGTAAAAAAGAATTTGG
**
8369 TAATTAAAAGAGTAAAAGTAAAATTGGTAATTTTAAAAAA-AAGAATTTGGTAATTAAAAGAGTA
1 ------AAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAGAAGAATTTGGTAATTAAAAGAGTA
* *
8433 AAAGTAAAATTAGTAATT---AAAAAAGAATTTGGTAATTAAAAAAGGAGTAAAAGTAAAATTTG
60 AAAGTAAAATTAGTAATTAAAAAAAAAGAATTTGGTAA--AAAAAAAGAGTAAAAGTAAAATTGG
* *
8495 -TAAGTAAAAAGAATTTGGTAATTAAAA
123 TTAAGAAAAAAGAATTTGGTAAGTAAAA
8522 AAGAATCAAT
Statistics
Matches: 303, Mismatches: 11, Indels: 25
0.89 0.03 0.07
Matches are distributed among these distances:
173 79 0.26
174 61 0.20
175 28 0.09
177 14 0.05
178 22 0.07
179 3 0.01
180 23 0.08
181 42 0.14
182 31 0.10
ACGTcount: A:0.58, C:0.00, G:0.17, T:0.24
Consensus pattern (175 bp):
AAAGAGTAAAAGTAAAATTGGTAATTAAAAAAAAGAAGAATTTGGTAATTAAAAGAGTAAAAGTA
AAATTAGTAATTAAAAAAAAAGAATTTGGTAAAAAAAAAGAGTAAAAGTAAAATTGGTTAAGAAA
AAAGAATTTGGTAAGTAAAAGAGTAAAAAGTAAAAAAGAATTTGG
Found at i:8323 original size:20 final size:20
Alignment explanation
Indices: 8298--8345 Score: 57
Period size: 20 Copynumber: 2.5 Consensus size: 20
8288 TAAAAAAAAG
8298 AGTAAAAGTAA-AA-TTGGTAA
1 AGTAAAAG-AAGAATTTGGT-A
8318 AGTAAAA-AAGAATTTGGTA
1 AGTAAAAGAAGAATTTGGTA
8337 AGTAAAAGA
1 AGTAAAAGA
8346 GTAAAAAGTA
Statistics
Matches: 25, Mismatches: 0, Indels: 6
0.81 0.00 0.19
Matches are distributed among these distances:
18 2 0.08
19 10 0.40
20 13 0.52
ACGTcount: A:0.56, C:0.00, G:0.21, T:0.23
Consensus pattern (20 bp):
AGTAAAAGAAGAATTTGGTA
Found at i:8359 original size:34 final size:33
Alignment explanation
Indices: 8316--8391 Score: 134
Period size: 34 Copynumber: 2.3 Consensus size: 33
8306 TAAAATTGGT
8316 AAAGTAAAAAAGAATTTGGTAAGTAAAAGAGTAA
1 AAAGTAAAAAAGAATTTGGTAAGTAAAAGAGT-A
*
8350 AAAGTAAAAAAGAATTTGGTAATTAAAAGAGTA
1 AAAGTAAAAAAGAATTTGGTAAGTAAAAGAGTA
8383 AAAGTAAAA
1 AAAGTAAAA
8392 TTGGTAATTT
Statistics
Matches: 41, Mismatches: 1, Indels: 1
0.95 0.02 0.02
Matches are distributed among these distances:
33 10 0.24
34 31 0.76
ACGTcount: A:0.61, C:0.00, G:0.18, T:0.21
Consensus pattern (33 bp):
AAAGTAAAAAAGAATTTGGTAAGTAAAAGAGTA
Found at i:8383 original size:131 final size:132
Alignment explanation
Indices: 8223--8490 Score: 407
Period size: 131 Copynumber: 2.0 Consensus size: 132
8213 GTAATTAAAA
8223 AAAAGAAGAATTTGGTAATTAAAAGAGTAAAAGTAAAATTAGTAATTAAAAAAAAAAGAATTCGG
1 AAAAGAAGAATTTGGTAATTAAAAGAGTAAAAGTAAAATTAGTAATTAAAAAAAAAAGAATTCGG
*
8288 TAAAAAAAAGAGTAAAAGTAAAATTGGTAAAGTAAAAAAGAATTTGGTAAGT-AAAA-GAGTAAA
66 TAAAAAAAAGAGTAAAAGTAAAATTAGT-AAGTAAAAAAGAATTTGGTAAGTAAAAAGGAGT-AA
8351 AAGT
129 AAGT
* ** *
8355 AAAA-AAGAATTTGGTAATTAAAAGAGTAAAAGTAAAATTGGTAATTTTAAAAAAAAGAATTTGG
1 AAAAGAAGAATTTGGTAATTAAAAGAGTAAAAGTAAAATTAGTAATTAAAAAAAAAAGAATTCGG
** * *
8419 TAATTAAAAGAGTAAAAGTAAAATTAGTAATTAAAAAAGAATTTGGTAATTAAAAAAGGAGTAAA
66 TAAAAAAAAGAGTAAAAGTAAAATTAGTAAGTAAAAAAGAATTTGGTAAGT-AAAAAGGAGTAAA
8484 AGT
130 AGT
8487 AAAA
1 AAAA
8491 TTTGTAAGTA
Statistics
Matches: 124, Mismatches: 9, Indels: 6
0.89 0.06 0.04
Matches are distributed among these distances:
130 21 0.17
131 81 0.65
132 18 0.15
133 4 0.03
ACGTcount: A:0.58, C:0.00, G:0.17, T:0.24
Consensus pattern (132 bp):
AAAAGAAGAATTTGGTAATTAAAAGAGTAAAAGTAAAATTAGTAATTAAAAAAAAAAGAATTCGG
TAAAAAAAAGAGTAAAAGTAAAATTAGTAAGTAAAAAAGAATTTGGTAAGTAAAAAGGAGTAAAA
GT
Found at i:8418 original size:23 final size:23
Alignment explanation
Indices: 8355--8427 Score: 69
Period size: 23 Copynumber: 3.0 Consensus size: 23
8345 AGTAAAAAGT
8355 AAAAAAGAATTTGGTAA-TTAAA
1 AAAAAAGAATTTGGTAATTTAAA
* *
8377 AGAGTAAAAGTAAAATTGGTAATTTTAA
1 A-A--AAAAG--AATTTGGTAATTTAAA
8405 AAAAAAGAATTTGGTAA-TTAAA
1 AAAAAAGAATTTGGTAATTTAAA
8427 A
1 A
8428 GAGTAAAAGT
Statistics
Matches: 41, Mismatches: 4, Indels: 12
0.72 0.07 0.21
Matches are distributed among these distances:
22 6 0.15
23 10 0.24
25 10 0.24
27 10 0.24
28 5 0.12
ACGTcount: A:0.56, C:0.00, G:0.15, T:0.29
Consensus pattern (23 bp):
AAAAAAGAATTTGGTAATTTAAA
Found at i:8467 original size:19 final size:18
Alignment explanation
Indices: 8440--8527 Score: 64
Period size: 19 Copynumber: 5.2 Consensus size: 18
8430 GTAAAAGTAA
*
8440 AATTAGTAATTAAAAAAG
1 AATTTGTAATTAAAAAAG
8458 AATTTGGTAATTAAAAAAG
1 AATTT-GTAATTAAAAAAG
* **
8477 GA---GTAA--AAGTAA-
1 AATTTGTAATTAAAAAAG
*
8489 AATTTGTAAGT-AAAAAG
1 AATTTGTAATTAAAAAAG
8506 AATTTGGTAATTAAAAAAG
1 AATTT-GTAATTAAAAAAG
8525 AAT
1 AAT
8528 CAATAAAGTA
Statistics
Matches: 53, Mismatches: 8, Indels: 17
0.68 0.10 0.22
Matches are distributed among these distances:
12 1 0.02
13 4 0.08
15 8 0.15
16 3 0.06
17 5 0.09
18 9 0.17
19 23 0.43
ACGTcount: A:0.56, C:0.00, G:0.16, T:0.28
Consensus pattern (18 bp):
AATTTGTAATTAAAAAAG
Found at i:8520 original size:18 final size:18
Alignment explanation
Indices: 8489--8558 Score: 54
Period size: 18 Copynumber: 3.9 Consensus size: 18
8479 GTAAAAGTAA
8489 AATTTGTAAGT-AAAAAG
1 AATTTGTAAGTAAAAAAG
*
8506 AATTTGGTAATTAAAAAAG
1 AATTT-GTAAGTAAAAAAG
***
8525 AATCAATAAAGT-AAAAAG
1 AATTTGT-AAGTAAAAAAG
* *
8543 AATTGGTAACTAAAAA
1 AATTTGTAAGTAAAAA
8559 TTTGGTAATA
Statistics
Matches: 40, Mismatches: 9, Indels: 7
0.71 0.16 0.12
Matches are distributed among these distances:
17 8 0.20
18 20 0.50
19 12 0.30
ACGTcount: A:0.57, C:0.03, G:0.14, T:0.26
Consensus pattern (18 bp):
AATTTGTAAGTAAAAAAG
Found at i:8656 original size:48 final size:46
Alignment explanation
Indices: 8604--8694 Score: 130
Period size: 48 Copynumber: 1.9 Consensus size: 46
8594 AAAAAAAAAC
*
8604 TTGGTAATTAAAAAGTTAAAATGAAATTGGG-TAATTAAAGAGTAAAGT
1 TTGGTAATTAAAAAG-TAAAATGAAA--GGGATAATGAAAGAGTAAAGT
*
8652 TTGGTAATTAAAGAGTAAAATGAAAGGGATAATGAAAGAGTAA
1 TTGGTAATTAAAAAGTAAAATGAAAGGGATAATGAAAGAGTAA
8695 TTGGTAAATT
Statistics
Matches: 40, Mismatches: 2, Indels: 4
0.87 0.04 0.09
Matches are distributed among these distances:
45 3 0.08
46 13 0.32
47 10 0.25
48 14 0.35
ACGTcount: A:0.49, C:0.00, G:0.23, T:0.27
Consensus pattern (46 bp):
TTGGTAATTAAAAAGTAAAATGAAAGGGATAATGAAAGAGTAAAGT
Found at i:8899 original size:27 final size:27
Alignment explanation
Indices: 8869--8960 Score: 78
Period size: 27 Copynumber: 3.4 Consensus size: 27
8859 TGGTCAACTT
8869 GGTAATTAAAAAGTAAAAATGAAATTG
1 GGTAATTAAAAAGTAAAAATGAAATTG
* *** *
8896 GGTAATTAAAGAGTAATTGGTAAAATTG
1 GGTAATTAAAAAGTAA-AAATGAAATTG
* * * *
8924 GATAATTAAAGAA-TGAAAATGAATTTT
1 GGTAATTAAA-AAGTAAAAATGAAATTG
8951 GGTAATTAAA
1 GGTAATTAAA
8961 GGGTAAAATT
Statistics
Matches: 48, Mismatches: 15, Indels: 4
0.72 0.22 0.06
Matches are distributed among these distances:
27 29 0.60
28 18 0.38
29 1 0.02
ACGTcount: A:0.50, C:0.00, G:0.20, T:0.30
Consensus pattern (27 bp):
GGTAATTAAAAAGTAAAAATGAAATTG
Found at i:8943 original size:55 final size:54
Alignment explanation
Indices: 8856--8966 Score: 143
Period size: 55 Copynumber: 2.0 Consensus size: 54
8846 GTAAAAAGAA
* *
8856 AATTGGTCAACTTGGTAATTAAAAAGTAAAAATGAAATTGGGTAATTAAAGAGT
1 AATTGGTAAAATTGGTAATTAAAAAGTAAAAATGAAATTGGGTAATTAAAGAGT
* * * *
8910 AATTGGTAAAATTGGATAATTAAAGAA-TGAAAATGAATTTTGGTAATTAAAGGGT
1 AATTGGTAAAATTGG-TAATTAAA-AAGTAAAAATGAAATTGGGTAATTAAAGAGT
8965 AA
1 AA
8967 AATTTGGTAA
Statistics
Matches: 49, Mismatches: 6, Indels: 3
0.84 0.10 0.05
Matches are distributed among these distances:
54 13 0.27
55 34 0.69
56 2 0.04
ACGTcount: A:0.47, C:0.02, G:0.21, T:0.31
Consensus pattern (54 bp):
AATTGGTAAAATTGGTAATTAAAAAGTAAAAATGAAATTGGGTAATTAAAGAGT
Done.