Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017056.1 Corchorus olitorius cultivar O-4 contig17089, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  72412

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1912--1971
6
10.0
6
98
0
111
50
31
0
18
1.47
2001--2148
38
3.9
38
88
1
208
22
33
18
25
1.97
4762--4824
34
1.9
33
93
6
110
22
20
31
25
1.98
5184--5230
21
2.2
22
77
11
53
31
25
10
31
1.90
13070--13147
29
2.7
29
82
9
79
24
8
16
50
1.74
15835--15876
21
2.0
21
85
4
57
16
26
30
26
1.97
15810--15961
76
2.0
76
81
7
175
17
29
28
24
1.97
16986--17016
16
1.9
16
93
0
53
29
6
25
38
1.81
18427--18473
20
2.4
20
85
3
60
17
17
10
55
1.69
43774--43808
11
3.2
11
87
0
52
77
0
14
8
0.99
44460--44529
25
2.9
25
80
4
90
40
10
30
20
1.85
48604--48628
7
3.6
7
100
0
50
76
0
24
0
0.80
54696--54744
26
1.9
26
84
12
66
55
0
0
44
0.99
54841--54901
29
2.1
30
84
9
81
42
3
4
49
1.40
55031--55124
45
2.2
43
86
7
129
37
21
5
36
1.76
55197--55784
293
2.0
294
90
1
939
42
15
16
25
1.88
55810--55853
3
14.7
3
100
0
88
65
0
0
34
0.93
58707--58732
13
2.0
13
100
0
52
53
30
0
15
1.42
59179--59221
22
1.9
23
85
4
61
41
13
18
25
1.88
65861--65933
30
2.4
30
88
4
103
41
20
24
13
1.89
71600--71639
2
19.5
2
89
5
62
50
0
5
45
1.23
71669--71885
108
2.0
107
96
0
398
38
8
8
44
1.67
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71943--72006
21
3.2
21
66
20
64
51
9
1
37
1.44
71950--72010
18
3.2
18
66
20
52
52
8
1
37
1.41
71931--72011
39
2.0
40
97
2
155
51
7
2
38
1.43

Tables:   1

The End!