Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017059.1 Corchorus olitorius cultivar O-4 contig17092, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  14871

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3370--3445
38
2.0
38
86
0
107
35
26
14
23
1.93
3929--3953
11
2.3
11
100
0
50
44
20
0
36
1.52
4556--4607
26
2.0
26
88
7
79
40
9
7
42
1.66
5570--5738
92
1.9
90
81
7
211
30
13
23
33
1.93
5807--5837
16
1.9
16
93
0
53
12
25
16
45
1.83
6639--6663
11
2.3
11
100
0
50
0
8
0
92
0.40
6576--6725
78
1.9
77
90
4
239
16
21
10
52
1.73
9538--9713
86
2.0
86
96
0
325
23
22
14
38
1.92
10133--10194
32
1.9
32
90
0
97
33
35
6
24
1.81
10702--10770
22
3.1
22
77
8
77
44
5
10
39
1.62
10710--10800
22
4.1
22
80
12
89
37
8
13
40
1.75
10967--11154
22
8.6
22
77
9
134
39
12
12
35
1.81
11150--11194
19
2.6
17
80
16
56
42
6
4
46
1.50
11157--11194
19
2.1
18
90
5
58
47
5
5
42
1.48
13924--14025
32
3.2
31
69
5
96
41
4
6
47
1.52
13919--14048
64
2.0
64
98
0
251
41
4
6
46
1.51
14083--14871
332
2.4
334
83
4
959
37
15
13
33
1.86

Tables:   1

The End!