Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017061.1 Corchorus olitorius cultivar O-4 contig17094, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20635

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3436--3477
22
1.9
22
85
0
57
19
28
23
28
1.98
8414--8449
19
1.9
18
88
5
54
33
22
2
41
1.68
9215--9343
30
4.4
30
79
10
124
28
26
24
20
1.99
9213--9327
59
1.9
59
85
3
160
27
24
25
22
2.00
9235--9349
29
3.9
30
79
5
92
30
26
24
19
1.98
12387--12421
15
2.3
15
90
0
52
51
14
0
34
1.42
14096--14623
22
23.6
22
63
20
100
35
9
17
37
1.83
14070--14173
44
2.4
44
78
0
109
38
13
11
36
1.81
14405--14510
43
2.4
43
80
10
101
30
8
16
45
1.76
14493--14581
23
4.0
23
75
8
94
37
8
17
35
1.82
14493--14578
46
1.9
45
83
9
113
38
9
15
37
1.79
18330--18400
21
3.4
21
94
0
124
26
21
33
18
1.96

Tables:   1

The End!