Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017062.1 Corchorus olitorius cultivar O-4 contig17095, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3814
ACGTcount: A:0.33, C:0.15, G:0.20, T:0.32


Found at i:2371 original size:9 final size:9

Alignment explanation


    Indices: 2357--2393  Score: 56
    Period size: 9  Copynumber: 4.0  Consensus size: 9

       2347 CTCACCGTTA

                     
       2357 CTTCATTTT
          1 CTTCATTTT

                      
       2366 CTTCATTTGT
          1 CTTCATTT-T

            *        
       2376 GTTCATTTT
          1 CTTCATTTT

                     
       2385 CTTCATTTT
          1 CTTCATTTT

       2394 GTTTTCTCCA


Statistics
Matches: 25,  Mismatches: 2, Indels: 2
        0.86            0.07        0.07

Matches are distributed among these distances:
   9   17  0.68
  10    8  0.32

ACGTcount: A:0.11, C:0.19, G:0.05, T:0.65


Consensus pattern (9 bp):   
CTTCATTTT

Found at i:2382 original size:19 final size:18

Alignment explanation


    Indices: 2358--2396  Score: 69
    Period size: 19  Copynumber: 2.1  Consensus size: 18

       2348 TCACCGTTAC

                               
       2358 TTCATTTTCTTCATTTGTG
          1 TTCATTTTCTTCATTT-TG

                              
       2377 TTCATTTTCTTCATTTTG
          1 TTCATTTTCTTCATTTTG

              
       2395 TT
          1 TT

       2397 TTCTCCACTG


Statistics
Matches: 20,  Mismatches: 0, Indels: 1
        0.95            0.00        0.05

Matches are distributed among these distances:
  18    4  0.20
  19   16  0.80

ACGTcount: A:0.10, C:0.15, G:0.08, T:0.67


Consensus pattern (18 bp):   
TTCATTTTCTTCATTTTG
Done.