Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017065.1 Corchorus olitorius cultivar O-4 contig17098, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 14332
ACGTcount: A:0.30, C:0.18, G:0.19, T:0.33


Found at i:3450 original size:1 final size:1

Alignment explanation


    Indices: 3444--3485  Score: 75
    Period size: 1  Copynumber: 42.0  Consensus size: 1

       3434 TAAACATTTG

                             *                        
       3444 TTTTTTTTTTTTTTTTTCTTTTTTTTTTTTTTTTTTTTTTTT
          1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT

       3486 CTGTTAGACT


Statistics
Matches: 39,  Mismatches: 2, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
   1   39  1.00

ACGTcount: A:0.00, C:0.02, G:0.00, T:0.98


Consensus pattern (1 bp):   
T

Found at i:11714 original size:13 final size:13

Alignment explanation


    Indices: 11696--11720  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

      11686 TTTGCCAAAA

                         
      11696 AATAATTTTAAGC
          1 AATAATTTTAAGC

                        
      11709 AATAATTTTAAG
          1 AATAATTTTAAG

      11721 GTGGTAAAAA


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.48, C:0.04, G:0.08, T:0.40


Consensus pattern (13 bp):   
AATAATTTTAAGC
Done.