Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017067.1 Corchorus olitorius cultivar O-4 contig17100, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2027
ACGTcount: A:0.29, C:0.22, G:0.20, T:0.29


Found at i:129 original size:19 final size:19

Alignment explanation


    Indices: 87--129  Score: 52
    Period size: 19  Copynumber: 2.3  Consensus size: 19

         77 GCCGAGCCAT

                               
         87 GCCGCGCACCAGCAAGCAG
          1 GCCGCGCACCAGCAAGCAG

            *      *            
        106 CCCGCGCGCCAAGC-AGCAG
          1 GCCGCGCACC-AGCAAGCAG

                 
        125 GCCGC
          1 GCCGC

        130 TGCTGCTGCC


Statistics
Matches: 20,  Mismatches: 3, Indels: 2
        0.80            0.12        0.08

Matches are distributed among these distances:
  19   17  0.85
  20    3  0.15

ACGTcount: A:0.21, C:0.47, G:0.33, T:0.00


Consensus pattern (19 bp):   
GCCGCGCACCAGCAAGCAG
Done.