Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001707.1 Corchorus olitorius cultivar O-4 contig01707, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 607

Length: 1012
ACGTcount: A:0.35, C:0.19, G:0.14, T:0.31


Found at i:813 original size:41 final size:41

Alignment explanation


    Indices: 742--840  Score: 117
    Period size: 41  Copynumber: 2.4  Consensus size: 41

        732 TCAATCTCTA

                       *         *         *         
        742 AAACCAGGGACCAAATTGAATTAAACAGTAACTAAAATCCT
          1 AAACCAGGGACTAAATTGAATCAAACAGTAAATAAAATCCT

                              *      *        *    * 
        783 AAACCAGGGACTAAATTGCATCAAATAGTAAATAGAATCTT
          1 AAACCAGGGACTAAATTGAATCAAACAGTAAATAAAATCCT

               **            
        824 AAATTAGGGACTAAATT
          1 AAACCAGGGACTAAATT

        841 AAAGAAATAA


Statistics
Matches: 49,  Mismatches: 9, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  41   49  1.00

ACGTcount: A:0.47, C:0.15, G:0.14, T:0.23


Consensus pattern (41 bp):   
AAACCAGGGACTAAATTGAATCAAACAGTAAATAAAATCCT
Done.