Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017071.1 Corchorus olitorius cultivar O-4 contig17104, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  4100

Tables:   1   

This is table  1  of  1  ( 9 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1301--2150
40
21.8
38
77
11
203
37
11
21
29
1.88
1490--2114
40
15.8
40
82
8
627
36
10
21
31
1.88
1499--2138
118
5.4
118
82
8
708
36
10
21
31
1.88
2213--2535
140
2.3
138
95
1
574
32
17
21
28
1.96
2503--2542
20
1.9
21
90
10
64
20
20
32
27
1.97
2740--3282
69
7.9
68
90
3
752
25
20
29
24
1.99
2740--3262
137
3.8
137
89
2
766
25
20
29
24
1.99
2740--3263
206
2.5
206
89
2
811
25
20
29
24
1.99
3944--4042
50
2.0
50
91
0
162
36
15
16
32
1.89

Tables:   1

The End!