Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017081.1 Corchorus olitorius cultivar O-4 contig17114, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  35731

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
27--74
18
2.7
18
77
6
53
6
10
54
29
1.59
64--137
30
2.5
30
79
0
85
12
6
62
18
1.51
117--235
30
4.2
29
76
12
113
10
6
57
25
1.55
136--185
24
2.1
24
92
0
82
8
8
56
28
1.57
115--205
24
3.5
24
68
20
58
8
8
56
26
1.59
195--282
42
2.1
42
82
0
104
15
2
59
22
1.48
5929--5958
7
4.3
7
100
0
60
73
0
26
0
0.84
8531--8588
2
30.5
2
79
10
68
46
0
5
48
1.24
17771--17834
12
5.1
12
71
17
58
15
1
43
39
1.56
17771--17833
24
2.5
26
76
7
67
14
1
44
39
1.55
18891--18924
2
17.0
2
100
0
68
50
0
0
50
1.00
20683--20731
23
2.0
27
84
15
70
40
2
8
48
1.44
22076--22111
13
2.9
12
92
8
63
52
0
8
38
1.32
22323--22600
157
1.8
155
84
7
386
35
8
3
52
1.49
25691--25720
6
5.0
6
91
0
51
20
13
66
0
1.24
27400--27430
2
15.5
2
100
0
62
51
0
0
48
1.00
35314--35380
25
2.7
25
77
9
82
50
13
17
17
1.77

Tables:   1

The End!