Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017083.1 Corchorus olitorius cultivar O-4 contig17116, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  34136

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1474--1514
20
2.0
21
90
4
66
24
21
24
29
1.99
4287--4336
24
2.1
24
96
0
91
8
36
12
44
1.71
4407--4531
61
2.0
61
92
0
205
32
8
12
47
1.71
9535--9570
1
36.0
1
100
0
72
100
0
0
0
0.00
20740--20781
16
2.6
16
92
0
66
52
30
11
4
1.59
20960--21054
32
3.0
32
90
4
138
37
33
11
16
1.85
21004--21060
16
3.6
16
69
9
53
36
36
8
17
1.81
21464--21577
56
2.0
56
96
0
210
35
24
0
39
1.62
21647--21713
21
3.2
21
66
16
57
28
7
14
49
1.71
21646--21726
42
1.9
42
94
0
144
29
8
16
45
1.77
24070--24320
136
1.9
133
90
6
400
37
11
2
48
1.52
24874--24916
16
2.8
15
77
19
52
9
23
34
32
1.87
27526--27562
19
1.9
19
88
0
56
18
29
21
29
1.97
28105--28174
34
2.1
34
97
0
131
14
15
11
58
1.63
30821--30994
35
4.9
34
77
6
177
42
9
16
31
1.81
30821--30994
70
2.5
71
83
2
208
42
9
16
31
1.81
33891--33933
21
2.2
19
84
12
52
34
0
6
58
1.25

Tables:   1

The End!