Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017084.1 Corchorus olitorius cultivar O-4 contig17117, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  13719

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
141--207
7
9.6
7
75
18
50
46
0
1
52
1.09
133--180
17
2.9
16
87
6
69
37
0
2
60
1.09
329--384
29
2.0
28
92
3
94
28
10
21
39
1.87
826--897
30
2.4
30
92
0
126
22
6
12
58
1.58
1113--1236
61
2.0
61
95
0
221
24
18
19
37
1.94
4501--4544
22
2.0
22
82
4
54
56
9
22
11
1.62
5248--5302
13
4.4
13
80
15
62
60
7
1
30
1.35
6315--6346
2
16.0
2
100
0
64
50
0
0
50
1.00
7921--8184
41
6.2
41
67
12
138
35
16
19
28
1.94
7887--8327
173
2.5
173
92
0
729
36
16
18
29
1.92
9480--9523
5
9.2
5
87
9
65
2
0
15
81
0.78
10685--10832
74
2.0
74
95
0
269
29
27
10
31
1.91
12257--12290
5
6.8
5
93
0
59
2
0
14
82
0.79
13434--13581
74
2.0
74
97
0
278
29
27
11
31
1.92

Tables:   1

The End!