Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01017087.1 Corchorus olitorius cultivar O-4 contig17120, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 38032
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30
Found at i:2426 original size:1 final size:1
Alignment explanation
Indices: 2420--2454 Score: 70
Period size: 1 Copynumber: 35.0 Consensus size: 1
2410 TAGTACATTG
2420 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
1 TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
2455 CTTTCTTTCT
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 34 1.00
ACGTcount: A:0.00, C:0.00, G:0.00, T:1.00
Consensus pattern (1 bp):
T
Found at i:5081 original size:17 final size:17
Alignment explanation
Indices: 5059--5093 Score: 54
Period size: 17 Copynumber: 2.1 Consensus size: 17
5049 AAGTCCGAAT
5059 CCGAATGAA-CCCGAACC
1 CCGAAT-AAGCCCGAACC
5076 CCGAATAAGCCCGAACC
1 CCGAATAAGCCCGAACC
5093 C
1 C
5094 GAAGCGCCCA
Statistics
Matches: 17, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
16 2 0.12
17 15 0.88
ACGTcount: A:0.34, C:0.43, G:0.17, T:0.06
Consensus pattern (17 bp):
CCGAATAAGCCCGAACC
Found at i:5957 original size:16 final size:16
Alignment explanation
Indices: 5938--5971 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
5928 AAGCTCTACA
*
5938 AAGCAGAAAAGCTCTG
1 AAGCAGAAAAGCCCTG
5954 AAGCAGAAAAGCCCTG
1 AAGCAGAAAAGCCCTG
5970 AA
1 AA
5972 AAATCAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.21, G:0.24, T:0.09
Consensus pattern (16 bp):
AAGCAGAAAAGCCCTG
Found at i:7038 original size:33 final size:33
Alignment explanation
Indices: 6990--7053 Score: 92
Period size: 33 Copynumber: 1.9 Consensus size: 33
6980 GCATCCGATC
* * *
6990 AGCAAAAGGTTAGTGAGTTGATTAATCCAAGTT
1 AGCAAAAGGTCAGTGAGATGATCAATCCAAGTT
*
7023 AGCAAAATGTCAGTGAGATGATCAATCCAAG
1 AGCAAAAGGTCAGTGAGATGATCAATCCAAG
7054 CCAGCTGAAG
Statistics
Matches: 27, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
33 27 1.00
ACGTcount: A:0.39, C:0.12, G:0.23, T:0.25
Consensus pattern (33 bp):
AGCAAAAGGTCAGTGAGATGATCAATCCAAGTT
Found at i:13416 original size:58 final size:58
Alignment explanation
Indices: 13343--13519 Score: 318
Period size: 58 Copynumber: 3.1 Consensus size: 58
13333 AACTACTTAC
13343 AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCACAA
1 AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCACAA
* *
13401 AAAGCTTGCTAAGTTGAAGATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCACAA
1 AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCACAA
* *
13459 AAAGCTCGCTAAGTTGGAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCAAAA
1 AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCACAA
13517 AAA
1 AAA
13520 AAAAAACCCA
Statistics
Matches: 113, Mismatches: 6, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
58 113 1.00
ACGTcount: A:0.40, C:0.18, G:0.25, T:0.18
Consensus pattern (58 bp):
AAAGCTCGCTAAGTTGAAAATCCTGCAAAGGACGGCTTAGGCAAAAGTTAGAGCACAA
Found at i:16919 original size:15 final size:16
Alignment explanation
Indices: 16884--16920 Score: 67
Period size: 16 Copynumber: 2.4 Consensus size: 16
16874 AATAATGAAA
16884 TTGATCACTTGGGTAC
1 TTGATCACTTGGGTAC
16900 TTGATCACTTGGGT-C
1 TTGATCACTTGGGTAC
16915 TTGATC
1 TTGATC
16921 CTAAGCGAAT
Statistics
Matches: 21, Mismatches: 0, Indels: 1
0.95 0.00 0.05
Matches are distributed among these distances:
15 7 0.33
16 14 0.67
ACGTcount: A:0.16, C:0.19, G:0.24, T:0.41
Consensus pattern (16 bp):
TTGATCACTTGGGTAC
Found at i:16951 original size:38 final size:38
Alignment explanation
Indices: 16900--17137 Score: 316
Period size: 38 Copynumber: 6.3 Consensus size: 38
16890 ACTTGGGTAC
*
16900 TTGATCACTTGGGTCTTGATCCTAAGCGAATGATGAAA
1 TTGATCGCTTGGGTCTTGATCCTAAGCGAATGATGAAA
**
16938 TTGATCGCTTGGGTCTTGGCCCTAAGCGAATGATGAAA
1 TTGATCGCTTGGGTCTTGATCCTAAGCGAATGATGAAA
* * *
16976 TTGATTGCTTAGGTCTTGATCCCAAGCGAATGATGAAA
1 TTGATCGCTTGGGTCTTGATCCTAAGCGAATGATGAAA
*
17014 TTGATCGCTTGGGTCTTGGTCCTAAGCGAATGATGAAA
1 TTGATCGCTTGGGTCTTGATCCTAAGCGAATGATGAAA
* * * * *
17052 TTGATCGCTTAGGTCTTAATCCCAAGCGAATAAAGAAA
1 TTGATCGCTTGGGTCTTGATCCTAAGCGAATGATGAAA
** *
17090 TTGATCGCTTGGGTCTTGATCAAAAGCGAATAAT-AAA
1 TTGATCGCTTGGGTCTTGATCCTAAGCGAATGATGAAA
*
17127 TTTGGTCGCTT
1 -TTGATCGCTT
17138 TGTCGCAAGT
Statistics
Matches: 175, Mismatches: 24, Indels: 2
0.87 0.12 0.01
Matches are distributed among these distances:
37 3 0.02
38 172 0.98
ACGTcount: A:0.28, C:0.16, G:0.24, T:0.31
Consensus pattern (38 bp):
TTGATCGCTTGGGTCTTGATCCTAAGCGAATGATGAAA
Found at i:17706 original size:81 final size:80
Alignment explanation
Indices: 17606--17770 Score: 294
Period size: 81 Copynumber: 2.0 Consensus size: 80
17596 ACCTTACTGC
*
17606 TCAAATTTTAATGGCTCAAATCAAGTTAGTGGGTGAATGTATGTACATGTGTCGATCTTCATGGA
1 TCAAATTTTAATGGCTCAAATCAAGTTAGTGGGTGAATGTATGTACATGTGTCGATCTTCATGAA
17671 TGGCAAGAAGAAAAA
66 TGGCAAGAAGAAAAA
*
17686 TCAAATTTTTAATGTCTCAAATCAAGTTAGTGGGTGAATGTATGTACATGTGTCGATCTTCATGA
1 TCAAA-TTTTAATGGCTCAAATCAAGTTAGTGGGTGAATGTATGTACATGTGTCGATCTTCATGA
*
17751 ATGGCAAGGAGAAAAA
65 ATGGCAAGAAGAAAAA
17767 TCAA
1 TCAA
17771 CAAAACAAAG
Statistics
Matches: 81, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
80 5 0.06
81 76 0.94
ACGTcount: A:0.35, C:0.12, G:0.22, T:0.31
Consensus pattern (80 bp):
TCAAATTTTAATGGCTCAAATCAAGTTAGTGGGTGAATGTATGTACATGTGTCGATCTTCATGAA
TGGCAAGAAGAAAAA
Found at i:18675 original size:16 final size:16
Alignment explanation
Indices: 18656--18689 Score: 59
Period size: 16 Copynumber: 2.1 Consensus size: 16
18646 AAGCTCTACA
*
18656 AAGCAGAAAAGCTCTG
1 AAGCAGAAAAGCCCTG
18672 AAGCAGAAAAGCCCTG
1 AAGCAGAAAAGCCCTG
18688 AA
1 AA
18690 AAATCAAGAT
Statistics
Matches: 17, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
16 17 1.00
ACGTcount: A:0.47, C:0.21, G:0.24, T:0.09
Consensus pattern (16 bp):
AAGCAGAAAAGCCCTG
Found at i:18988 original size:15 final size:15
Alignment explanation
Indices: 18968--18996 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
18958 TCATTGTAAT
18968 TCATTCAGAGATTGC
1 TCATTCAGAGATTGC
18983 TCATTCAGAGATTG
1 TCATTCAGAGATTG
18997 TACTCCTAAT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.28, C:0.17, G:0.21, T:0.34
Consensus pattern (15 bp):
TCATTCAGAGATTGC
Found at i:23313 original size:45 final size:45
Alignment explanation
Indices: 23263--23352 Score: 171
Period size: 45 Copynumber: 2.0 Consensus size: 45
23253 CTCGTGCCCC
*
23263 TAACATATAACAGTTTTTTTCCTTATCTCTCTGTAATACATGATT
1 TAACATATAACAATTTTTTTCCTTATCTCTCTGTAATACATGATT
23308 TAACATATAACAATTTTTTTCCTTATCTCTCTGTAATACATGATT
1 TAACATATAACAATTTTTTTCCTTATCTCTCTGTAATACATGATT
23353 CTTTGCTATT
Statistics
Matches: 44, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
45 44 1.00
ACGTcount: A:0.30, C:0.18, G:0.06, T:0.47
Consensus pattern (45 bp):
TAACATATAACAATTTTTTTCCTTATCTCTCTGTAATACATGATT
Found at i:24823 original size:65 final size:65
Alignment explanation
Indices: 24750--24874 Score: 223
Period size: 65 Copynumber: 1.9 Consensus size: 65
24740 TGAAACTTGG
*
24750 TATATTGCCCGGACCGGAGAGGCCTCCTATACCCGGTTCAACCGGTCCGGTTTGTAAAACTAAGT
1 TATATTGCCCGGACCGGAGAGGCCTCCTATACCCGGTTCAACCGATCCGGTTTGTAAAACTAAGT
* *
24815 TATATTGCCCGGACCGGAGAGGCCTCCTATACCTGGTTCAACCGATCCTGTTTGTAAAAC
1 TATATTGCCCGGACCGGAGAGGCCTCCTATACCCGGTTCAACCGATCCGGTTTGTAAAAC
24875 CATGCTTAGT
Statistics
Matches: 57, Mismatches: 3, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
65 57 1.00
ACGTcount: A:0.23, C:0.28, G:0.23, T:0.26
Consensus pattern (65 bp):
TATATTGCCCGGACCGGAGAGGCCTCCTATACCCGGTTCAACCGATCCGGTTTGTAAAACTAAGT
Found at i:25540 original size:14 final size:14
Alignment explanation
Indices: 25521--25548 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
25511 CGTTTGTCAA
25521 AATGCTCAAATAAG
1 AATGCTCAAATAAG
25535 AATGCTCAAATAAG
1 AATGCTCAAATAAG
25549 GATCCGATCT
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.50, C:0.14, G:0.14, T:0.21
Consensus pattern (14 bp):
AATGCTCAAATAAG
Found at i:25628 original size:60 final size:60
Alignment explanation
Indices: 25535--25670 Score: 254
Period size: 60 Copynumber: 2.3 Consensus size: 60
25525 CTCAAATAAG
* *
25535 AATGCTCAAATAAGGATCCGATCTTTTAATTTGGCCAAGTAAGGGCCTAACGTTTGCCAA
1 AATGCTCAAATAAGGGTCCGATCTTTTAATTTGGCCAAATAAGGGCCTAACGTTTGCCAA
25595 AATGCTCAAATAAGGGTCCGATCTTTTAATTTGGCCAAATAAGGGCCTAACGTTTGCCAA
1 AATGCTCAAATAAGGGTCCGATCTTTTAATTTGGCCAAATAAGGGCCTAACGTTTGCCAA
25655 AATGCTCAAATAAGGG
1 AATGCTCAAATAAGGG
25671 CCTGTCATCG
Statistics
Matches: 74, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
60 74 1.00
ACGTcount: A:0.33, C:0.19, G:0.21, T:0.27
Consensus pattern (60 bp):
AATGCTCAAATAAGGGTCCGATCTTTTAATTTGGCCAAATAAGGGCCTAACGTTTGCCAA
Found at i:25635 original size:29 final size:29
Alignment explanation
Indices: 25541--25639 Score: 85
Period size: 29 Copynumber: 3.3 Consensus size: 29
25531 TAAGAATGCT
*
25541 CAAATAAGGATCCGATCTTTTAATTTGGC
1 CAAATAAGGGTCCGATCTTTTAATTTGGC
* * * * **
25570 CAAGTAAGGG-CCTAACGTTTGCCAAAAT-GC
1 CAAATAAGGGTCCGATC-TTT--TAATTTGGC
25600 TCAAATAAGGGTCCGATCTTTTAATTTGGC
1 -CAAATAAGGGTCCGATCTTTTAATTTGGC
25630 CAAATAAGGG
1 CAAATAAGGG
25640 CCTAACGTTT
Statistics
Matches: 51, Mismatches: 13, Indels: 12
0.67 0.17 0.16
Matches are distributed among these distances:
28 4 0.08
29 24 0.47
30 4 0.08
31 15 0.29
32 4 0.08
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.28
Consensus pattern (29 bp):
CAAATAAGGGTCCGATCTTTTAATTTGGC
Found at i:25668 original size:31 final size:31
Alignment explanation
Indices: 25574--25673 Score: 109
Period size: 31 Copynumber: 3.3 Consensus size: 31
25564 TTTGGCCAAG
25574 TAAGGGCCTAACGTTTGCCAAAATGCTCAAA
1 TAAGGGCCTAACGTTTGCCAAAATGCTCAAA
* * * **
25605 TAAGGGTCCGATC-TTT--TAATTTGGC-CAAA
1 TAAGGG-CCTAACGTTTGCCAAAAT-GCTCAAA
25634 TAAGGGCCTAACGTTTGCCAAAATGCTCAAA
1 TAAGGGCCTAACGTTTGCCAAAATGCTCAAA
25665 TAAGGGCCT
1 TAAGGGCCT
25674 GTCATCGAAA
Statistics
Matches: 53, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
28 4 0.08
29 16 0.30
30 4 0.08
31 25 0.47
32 4 0.08
ACGTcount: A:0.32, C:0.21, G:0.21, T:0.26
Consensus pattern (31 bp):
TAAGGGCCTAACGTTTGCCAAAATGCTCAAA
Found at i:25747 original size:31 final size:31
Alignment explanation
Indices: 25712--25815 Score: 108
Period size: 31 Copynumber: 3.4 Consensus size: 31
25702 AACTGATACC
25712 AGGCCCTTATTTGAGCATTTTCGATAACGTT
1 AGGCCCTTATTTGAGCATTTTCGATAACGTT
** * *
25743 AGGCCCTTATTTG-GCCAAATT--AGAA-GATC
1 AGGCCCTTATTTGAG-CATTTTCGATAACG-TT
* *
25772 AAGCCCTTATTTAAGCATTTTCGATAACGTT
1 AGGCCCTTATTTGAGCATTTTCGATAACGTT
25803 AGGCCCTTATTTG
1 AGGCCCTTATTTG
25816 GTTAAATTAA
Statistics
Matches: 55, Mismatches: 12, Indels: 12
0.70 0.15 0.15
Matches are distributed among these distances:
28 1 0.02
29 19 0.35
30 2 0.04
31 32 0.58
32 1 0.02
ACGTcount: A:0.26, C:0.20, G:0.18, T:0.36
Consensus pattern (31 bp):
AGGCCCTTATTTGAGCATTTTCGATAACGTT
Found at i:25790 original size:60 final size:61
Alignment explanation
Indices: 25714--25874 Score: 238
Period size: 60 Copynumber: 2.7 Consensus size: 61
25704 CTGATACCAG
*
25714 GCCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGGCCAAATTAGAAGATC-AA
1 GCCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGAA
* **
25774 GCCCTTATTTAAGCATTTTCGATAACGTTAGGCCCTTATTTGGTTAAATTAAAAGATCGAA
1 GCCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGAA
* *
25835 -CCCTTATTTGAGCATTTTGGCA-AACATTAGGCCCTTATTT
1 GCCCTTATTTGAGCATTTTCG-ATAACGTTAGGCCCTTATTT
25875 AAGCAATTAG
Statistics
Matches: 92, Mismatches: 7, Indels: 4
0.89 0.07 0.04
Matches are distributed among these distances:
60 89 0.97
61 3 0.03
ACGTcount: A:0.28, C:0.19, G:0.17, T:0.36
Consensus pattern (61 bp):
GCCCTTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGAA
Found at i:27103 original size:5 final size:5
Alignment explanation
Indices: 27093--27117 Score: 50
Period size: 5 Copynumber: 5.0 Consensus size: 5
27083 CTACTATACA
27093 ATTTT ATTTT ATTTT ATTTT ATTTT
1 ATTTT ATTTT ATTTT ATTTT ATTTT
27118 TTCTGAAATA
Statistics
Matches: 20, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
5 20 1.00
ACGTcount: A:0.20, C:0.00, G:0.00, T:0.80
Consensus pattern (5 bp):
ATTTT
Found at i:30106 original size:15 final size:16
Alignment explanation
Indices: 30088--30117 Score: 53
Period size: 15 Copynumber: 1.9 Consensus size: 16
30078 ATAAATAATG
30088 ATATTATAAT-TAAAC
1 ATATTATAATATAAAC
30103 ATATTATAATATAAA
1 ATATTATAATATAAA
30118 AACAATTATT
Statistics
Matches: 14, Mismatches: 0, Indels: 1
0.93 0.00 0.07
Matches are distributed among these distances:
15 10 0.71
16 4 0.29
ACGTcount: A:0.57, C:0.03, G:0.00, T:0.40
Consensus pattern (16 bp):
ATATTATAATATAAAC
Found at i:31661 original size:15 final size:14
Alignment explanation
Indices: 31599--31663 Score: 51
Period size: 15 Copynumber: 4.3 Consensus size: 14
31589 CCGAAGTTAT
*
31599 CCGAACCATATGAC
1 CCGAACCAAATGAC
*
31613 CCGAAACCGAAACGAC
1 CCG-AACC-AAATGAC
31629 CC-AACCCAGAATTGAC
1 CCGAA-CCA-AA-TGAC
31645 CCGAACCTAAATGAC
1 CCGAACC-AAATGAC
31660 CCGA
1 CCGA
31664 TATTTGAGCG
Statistics
Matches: 41, Mismatches: 3, Indels: 13
0.72 0.05 0.23
Matches are distributed among these distances:
14 6 0.15
15 16 0.39
16 16 0.39
17 3 0.07
ACGTcount: A:0.38, C:0.37, G:0.15, T:0.09
Consensus pattern (14 bp):
CCGAACCAAATGAC
Found at i:31975 original size:31 final size:29
Alignment explanation
Indices: 31919--31983 Score: 96
Period size: 31 Copynumber: 2.2 Consensus size: 29
31909 CGGTAACAGT
31919 CAAATAAGTCCCTAGACTTCAATTTTGGC
1 CAAATAAGTCCCTAGACTTCAATTTTGGC
31948 CAAATAAGCTCCCT-GAACTCTCAATTTTGGC
1 CAAATAAG-TCCCTAG-ACT-TCAATTTTGGC
31979 CAAAT
1 CAAAT
31984 TAGCCCTTTT
Statistics
Matches: 33, Mismatches: 0, Indels: 4
0.89 0.00 0.11
Matches are distributed among these distances:
29 9 0.27
30 8 0.24
31 16 0.48
ACGTcount: A:0.32, C:0.26, G:0.12, T:0.29
Consensus pattern (29 bp):
CAAATAAGTCCCTAGACTTCAATTTTGGC
Found at i:33166 original size:44 final size:44
Alignment explanation
Indices: 33098--33187 Score: 155
Period size: 44 Copynumber: 2.0 Consensus size: 44
33088 TTGTTATAGT
33098 TTTAACCATTCTAAATTACTATTTATTCAATAAAATTTGTATTA
1 TTTAACCATTCTAAATTACTATTTATTCAATAAAATTTGTATTA
*
33142 TTTAACCATTCTAAATTA-TCATTTATTCAATAAAATTTGTGTTA
1 TTTAACCATTCTAAATTACT-ATTTATTCAATAAAATTTGTATTA
33186 TT
1 TT
33188 GTTATAATTT
Statistics
Matches: 44, Mismatches: 1, Indels: 2
0.94 0.02 0.04
Matches are distributed among these distances:
43 1 0.02
44 43 0.98
ACGTcount: A:0.37, C:0.11, G:0.03, T:0.49
Consensus pattern (44 bp):
TTTAACCATTCTAAATTACTATTTATTCAATAAAATTTGTATTA
Found at i:33412 original size:16 final size:15
Alignment explanation
Indices: 33376--33418 Score: 52
Period size: 16 Copynumber: 2.9 Consensus size: 15
33366 ACAACCAAAT
*
33376 CATGACTCCACT-AA
1 CATGACTCCAATAAA
*
33390 CAAGACTCCAATAAAA
1 CATGACTCCAAT-AAA
33406 CATGACTCCAATA
1 CATGACTCCAATA
33419 TCTGATAACT
Statistics
Matches: 24, Mismatches: 3, Indels: 3
0.80 0.10 0.10
Matches are distributed among these distances:
14 10 0.42
15 1 0.04
16 13 0.54
ACGTcount: A:0.44, C:0.30, G:0.07, T:0.19
Consensus pattern (15 bp):
CATGACTCCAATAAA
Found at i:35876 original size:12 final size:13
Alignment explanation
Indices: 35858--35887 Score: 53
Period size: 12 Copynumber: 2.4 Consensus size: 13
35848 GTTTTCTTTA
35858 ATTTTCTTGATTG
1 ATTTTCTTGATTG
35871 -TTTTCTTGATTG
1 ATTTTCTTGATTG
35883 ATTTT
1 ATTTT
35888 AATTGCTAGT
Statistics
Matches: 16, Mismatches: 0, Indels: 2
0.89 0.00 0.11
Matches are distributed among these distances:
12 12 0.75
13 4 0.25
ACGTcount: A:0.13, C:0.07, G:0.13, T:0.67
Consensus pattern (13 bp):
ATTTTCTTGATTG
Done.