Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001709.1 Corchorus olitorius cultivar O-4 contig01709, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 807

Length: 1346
ACGTcount: A:0.33, C:0.16, G:0.19, T:0.32


Found at i:986 original size:18 final size:19

Alignment explanation


    Indices: 963--1003  Score: 66
    Period size: 18  Copynumber: 2.2  Consensus size: 19

        953 CCGAGCAAAG

                               
        963 TTCTGGAAAACCTGG-AAA
          1 TTCTGGAAAACCTGGAAAA

                  *            
        981 TTCTGGTAAACCTGGAAAA
          1 TTCTGGAAAACCTGGAAAA

                
       1000 TTCT
          1 TTCT

       1004 AGAATAAGTT


Statistics
Matches: 21,  Mismatches: 1, Indels: 1
        0.91            0.04        0.04

Matches are distributed among these distances:
  18   14  0.67
  19    7  0.33

ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29


Consensus pattern (19 bp):   
TTCTGGAAAACCTGGAAAA

Done.