Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017091.1 Corchorus olitorius cultivar O-4 contig17124, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9758
ACGTcount: A:0.32, C:0.18, G:0.20, T:0.30


Found at i:2598 original size:22 final size:21

Alignment explanation


    Indices: 2554--2600  Score: 58
    Period size: 22  Copynumber: 2.2  Consensus size: 21

       2544 CCAATTTAGG

                     *     *     
       2554 TTTAGATTTCAATTTCTTGTT
          1 TTTAGATTTAAATTTATTGTT

                               *  
       2575 TTTAGATTTAAGATTTATTTTT
          1 TTTAGATTTAA-ATTTATTGTT

                
       2597 TTTA
          1 TTTA

       2601 TGCATCTTAG


Statistics
Matches: 22,  Mismatches: 3, Indels: 1
        0.85            0.12        0.04

Matches are distributed among these distances:
  21   10  0.45
  22   12  0.55

ACGTcount: A:0.23, C:0.04, G:0.09, T:0.64


Consensus pattern (21 bp):   
TTTAGATTTAAATTTATTGTT

Found at i:2990 original size:15 final size:15

Alignment explanation


    Indices: 2972--3005  Score: 59
    Period size: 15  Copynumber: 2.3  Consensus size: 15

       2962 TTTGTTGTTG

                  *        
       2972 GATTGTTTTTGGATT
          1 GATTGTGTTTGGATT

                           
       2987 GATTGTGTTTGGATT
          1 GATTGTGTTTGGATT

                
       3002 GATT
          1 GATT

       3006 ATTCCCCAAT


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  15   18  1.00

ACGTcount: A:0.15, C:0.00, G:0.29, T:0.56


Consensus pattern (15 bp):   
GATTGTGTTTGGATT
Done.