Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017092.1 Corchorus olitorius cultivar O-4 contig17125, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26345

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2895--2924
12
2.4
13
88
11
53
13
6
13
66
1.43
6509--6552
14
2.9
16
76
13
56
40
29
9
20
1.83
6641--6685
17
2.8
17
93
6
76
42
8
6
42
1.62
8397--8479
41
2.0
41
97
0
157
38
21
19
20
1.93
8425--8454
13
2.3
13
100
0
60
36
20
23
20
1.95
8438--8499
28
2.2
28
91
0
97
38
20
19
20
1.93
12903--12935
2
16.5
2
87
12
50
48
3
0
48
1.17
14141--14469
22
15.2
21
70
13
152
38
10
17
33
1.84
14137--14263
66
1.9
66
84
6
168
36
11
18
33
1.86
14142--14381
88
2.7
88
80
2
230
36
11
17
35
1.85
14727--15032
41
7.4
41
88
2
396
30
14
18
36
1.91
14727--15032
126
2.5
123
87
1
423
30
14
18
36
1.91
15490--15796
22
13.8
23
67
14
76
40
10
14
33
1.81
15604--15729
22
5.6
22
73
10
78
39
11
13
35
1.80
15692--15790
22
4.6
21
74
12
85
45
8
15
31
1.75
15836--16110
22
13.0
21
67
16
122
40
9
14
36
1.79
15833--16240
42
9.9
41
69
14
114
38
9
16
35
1.81
15922--16085
44
3.8
43
83
8
199
40
10
12
37
1.77
15922--16109
44
4.3
43
79
14
165
40
10
11
36
1.76
15763--16311
288
1.9
289
96
0
1019
38
10
15
36
1.81
16124--16503
22
17.8
22
67
15
147
39
9
16
35
1.80
16567--16641
22
3.3
23
74
5
73
32
10
17
40
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
20720--20778
26
2.2
26
82
11
66
64
1
10
23
1.34
20829--20916
29
2.8
32
84
10
137
17
25
6
51
1.69
22423--22493
33
2.2
33
89
0
106
38
21
22
18
1.94
23140--23180
16
2.7
16
92
7
68
56
0
21
21
1.43

Tables:   1

The End!