Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017096.1 Corchorus olitorius cultivar O-4 contig17129, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32996

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
486--811
164
2.0
166
80
6
376
43
24
3
28
1.72
1157--1189
15
2.1
16
88
5
50
51
0
3
45
1.16
2622--2920
47
6.3
47
96
0
517
47
4
18
30
1.67
2884--2956
36
2.0
36
86
0
101
43
5
17
32
1.72
5765--5891
38
3.5
36
86
5
134
31
16
21
30
1.95
5788--5907
38
3.2
38
92
0
195
25
18
25
30
1.98
5788--5937
38
3.9
38
88
1
194
28
16
23
31
1.96
21554--21598
20
2.2
21
84
4
56
55
15
4
24
1.59
23513--23580
34
2.0
34
88
0
100
17
25
25
32
1.97
23405--23806
209
1.9
211
88
2
612
21
25
21
31
1.98
24876--24919
8
5.5
8
78
10
54
79
0
0
20
0.73
25052--25189
3
46.0
3
92
2
233
65
0
2
32
1.05
25636--25710
28
2.7
28
85
4
89
33
18
9
38
1.83
27414--27480
34
2.0
34
96
0
125
20
26
23
28
1.99
27414--27495
34
2.4
34
89
0
110
20
26
24
28
1.99
27465--27649
102
1.8
102
89
0
289
16
22
23
37
1.93
27444--27666
102
2.2
102
84
2
288
16
23
24
34
1.95
27755--27832
34
2.3
34
90
0
120
25
26
19
28
1.99
27287--27901
337
1.8
336
93
1
1079
20
24
21
33
1.97
28041--28108
25
2.7
25
95
0
118
27
22
20
29
1.98

Tables:   1

The End!