Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017097.1 Corchorus olitorius cultivar O-4 contig17130, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  22347

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4283--4363
39
2.0
40
90
2
128
51
6
3
38
1.45
4295--4358
17
3.2
20
68
20
53
50
7
3
39
1.47
4354--4425
25
2.9
25
97
2
137
29
6
8
55
1.56
4495--4910
204
2.0
205
93
3
712
37
11
8
42
1.71
4884--5177
144
2.0
144
99
0
579
40
10
12
36
1.77
6912--7020
58
1.9
57
90
1
173
35
19
13
31
1.91
9805--9830
12
2.2
12
100
0
52
19
15
15
50
1.79
10489--11258
422
1.8
431
84
5
1091
34
17
15
33
1.90
10897--11963
321
3.3
318
75
11
933
35
17
15
31
1.91
13248--13298
22
2.2
24
83
16
72
41
0
0
58
0.98
13248--13296
25
2.0
25
84
8
64
40
0
0
59
0.98
14195--14284
44
2.0
44
93
0
153
34
11
4
50
1.58
14472--14518
16
3.1
16
75
12
53
42
27
8
21
1.81
17710--17781
26
2.8
25
85
8
90
12
18
25
44
1.84
21245--21288
20
2.3
19
80
4
52
61
0
2
36
1.09
21370--21394
12
2.1
12
100
0
50
44
24
8
24
1.80
21436--22017
290
2.0
293
88
2
877
24
16
16
42
1.88
22294--22347
27
2.0
26
86
10
74
35
20
3
40
1.70

Tables:   1

The End!