Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017098.1 Corchorus olitorius cultivar O-4 contig17131, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  3024

Tables:   1   

This is table  1  of  1  ( 22 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
160--231
31
2.3
31
75
17
78
26
4
8
61
1.43
547--636
16
5.6
16
69
10
76
34
40
16
8
1.80
510--558
6
8.3
6
79
4
55
32
48
16
2
1.57
547--636
32
2.8
32
91
0
144
34
40
16
8
1.80
945--1161
103
2.1
102
91
1
346
41
4
14
39
1.66
945--1173
51
4.5
51
91
1
343
41
4
13
40
1.66
1156--1713
50
11.1
47
81
8
429
43
5
13
37
1.68
1156--1714
100
5.6
99
84
5
621
42
5
13
37
1.68
1228--1374
30
5.6
29
63
30
87
42
4
13
38
1.65
1166--1724
150
3.7
149
82
7
641
42
5
14
37
1.69
1457--1494
20
2.0
20
94
5
69
44
5
10
39
1.61
2316--2704
48
8.1
48
84
1
492
15
21
18
43
1.88
2681--2724
20
2.2
20
95
0
79
18
15
4
61
1.50
2631--2772
68
2.1
68
87
0
203
14
21
14
49
1.79
2699--2816
48
2.5
48
90
0
182
15
21
16
47
1.82
2586--2898
116
2.7
116
88
1
457
15
24
15
45
1.84
2750--2882
68
2.0
68
86
0
185
17
24
12
45
1.83
2818--2971
48
3.4
47
79
15
178
15
24
15
44
1.85
2866--2947
41
2.0
41
95
0
146
15
28
15
40
1.89
2586--2937
116
3.0
115
75
12
335
15
24
15
45
1.84
2955--2993
20
2.0
20
89
0
60
15
17
5
61
1.51
2699--3009
157
1.9
159
86
4
428
14
23
15
46
1.83

Tables:   1

The End!