Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017099.1 Corchorus olitorius cultivar O-4 contig17132, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  11267

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2--47
20
2.3
20
85
7
58
21
15
6
56
1.61
22--142
47
2.5
47
91
2
197
12
20
18
48
1.80
117--162
20
2.3
20
88
0
65
17
13
8
60
1.56
185--230
20
2.3
20
92
0
74
15
15
10
58
1.63
253--298
20
2.3
20
92
0
74
13
13
10
63
1.53
321--366
20
2.3
20
100
0
92
13
13
10
63
1.53
70--397
68
4.8
68
90
1
516
12
18
18
49
1.78
342--503
48
3.4
48
87
0
234
14
21
20
43
1.87
2008--2051
14
2.9
16
76
13
56
40
29
9
20
1.83
2140--2184
17
2.8
17
93
6
76
42
8
6
42
1.62
2355--2597
130
1.9
130
89
3
382
48
1
9
40
1.46
5427--5498
29
2.5
28
75
8
72
16
15
20
47
1.83
7104--7142
14
2.7
14
96
4
69
30
7
7
53
1.57
7527--7607
39
2.0
40
92
2
137
50
8
3
37
1.51
7872--7974
51
2.0
51
100
0
206
42
11
7
37
1.70
7717--8173
251
1.8
249
96
2
851
36
11
8
43
1.71
8688--8757
36
1.9
36
91
0
113
60
8
10
21
1.55
10673--10712
2
19.5
2
89
5
62
47
5
0
47
1.24
10921--11001
39
2.0
40
92
2
137
50
8
3
37
1.51

Tables:   1

The End!