Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001710.1 Corchorus olitorius cultivar O-4 contig01710, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 654

Length: 1090
ACGTcount: A:0.39, C:0.16, G:0.24, T:0.22


Found at i:816 original size:5 final size:5

Alignment explanation


    Indices: 728--815  Score: 79
    Period size: 5  Copynumber: 16.8  Consensus size: 5

        718 AGTCGGGTCG

                  *     *     *                                      
        728 CAAAA AAAAA AAAAA AAAAA CAAACAA CAACAA CAACAA CAAAA CAAAA
          1 CAAAA CAAAA CAAAA CAAAA C-AA-AA CAA-AA CAA-AA CAAAA CAAAA

                                *                    *     
        777 CAAAA CAAAGA -AAAA CCAAA CAAAA CAAAA CAAAG CAAA
          1 CAAAA CAAA-A CAAAA CAAAA CAAAA CAAAA CAAAA CAAA

        816 GATTGCGACG


Statistics
Matches: 74,  Mismatches: 5, Indels: 8
        0.85            0.06        0.09

Matches are distributed among these distances:
   4    1  0.01
   5   53  0.72
   6   17  0.23
   7    3  0.04

ACGTcount: A:0.78, C:0.19, G:0.02, T:0.00


Consensus pattern (5 bp):   
CAAAA
Done.