genome.fa.s17101.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017101.1 Corchorus olitorius cultivar O-4 contig17134, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  130255

Tables:   1   

This is table  1  of  1  ( 53 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6151--6243	46	2.0	46	100	0	186	43	6	8	41	1.61
6408--6451	16	2.8	16	78	0	52	43	34	9	13	1.76
18976--19052	33	2.3	34	79	16	90	9	24	38	27	1.85
24417--24448	16	1.9	17	93	6	57	81	0	9	9	0.88
33789--33829	22	1.9	22	95	5	75	43	9	7	39	1.65
36122--36174	18	3.3	18	65	29	55	24	49	7	18	1.74
36110--36302	30	6.8	30	73	13	185	23	48	13	14	1.79
36110--36302	84	2.3	84	72	7	185	23	48	13	14	1.79
36110--36341	54	4.2	54	87	4	268	24	48	13	13	1.78
36110--36346	30	8.5	28	70	17	86	24	48	13	13	1.78
36340--36444	27	4.1	27	80	14	141	27	26	32	13	1.94
36375--36487	21	5.1	21	82	12	127	27	21	38	12	1.89
36348--36465	48	2.5	48	91	0	209	27	23	35	12	1.92
36343--36465	27	5.1	24	77	18	123	27	25	34	13	1.93
48196--48237	1	42.0	1	95	0	75	97	0	2	0	0.16
48196--48275	6	14.2	6	96	1	62	82	0	17	0	0.67
48230--48275	3	15.3	3	95	0	83	69	0	30	0	0.89
54680--54928	121	2.0	126	87	8	366	37	10	2	49	1.49
55177--55223	15	3.1	15	75	6	51	44	4	2	48	1.34
60439--60467	5	5.8	5	100	0	58	41	0	20	37	1.53
61340--61385	23	1.9	25	86	8	69	17	8	2	71	1.21
61860--61920	29	2.1	29	100	0	122	47	13	3	36	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
62017--62083	22	3.1	22	95	2	118	28	8	8	53	1.62
62021--62087	21	3.1	21	95	2	116	26	8	8	55	1.61
62126--62155	1	30.0	1	100	0	60	0	0	0	100	0.00
70630--70658	11	2.7	11	94	5	51	75	6	0	17	1.01
71840--72382	180	3.0	176	80	9	596	33	16	12	37	1.87
90032--90077	6	7.7	6	100	0	92	32	17	0	50	1.47
93843--94033	22	8.7	22	73	4	116	43	12	12	31	1.79
93843--93966	44	2.8	43	79	9	142	42	14	11	31	1.81
93863--94010	66	2.2	66	82	4	165	40	12	12	34	1.81
94073--94114	22	1.9	22	85	0	57	40	2	23	33	1.68
94173--94407	22	10.7	21	71	8	121	32	11	17	39	1.84
94263--94407	66	2.2	66	79	0	164	32	12	16	38	1.86
94164--94386	44	5.1	44	69	8	148	32	11	17	38	1.85
94164--94397	88	2.7	90	77	6	246	32	10	17	38	1.85
94263--94407	44	3.3	44	77	1	148	32	12	16	38	1.86
97081--97515	210	2.1	211	80	3	493	33	14	23	28	1.94
105442--105499	29	2.0	28	80	9	64	31	15	13	39	1.86
110314--110354	20	2.2	18	86	8	55	36	19	2	41	1.65
110305--110364	30	2.0	31	86	3	86	36	18	5	40	1.72
112743--112794	10	5.2	10	88	0	77	32	3	17	46	1.66
112747--112794	20	2.4	20	96	0	87	33	4	16	45	1.67
112743--112801	30	2.0	30	93	0	100	35	5	15	44	1.68
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112747--112801	10	5.5	10	84	0	56	36	5	14	43	1.69
115289--115347	29	2.0	29	100	0	118	49	16	6	27	1.71
116552--116793	130	1.9	130	88	3	371	37	10	1	50	1.45
119625--119696	37	2.0	37	88	2	110	18	31	13	36	1.90
119626--119706	37	2.2	36	84	6	101	18	32	12	37	1.88
119718--119857	72	1.9	72	95	0	253	17	15	22	44	1.86
123378--123613	52	4.5	52	90	1	339	30	20	15	34	1.93
125928--126066	69	2.0	69	98	0	269	12	27	10	50	1.71
130011--130077	21	3.2	21	66	16	57	52	11	1	34	1.48

Tables:   1

The End!