Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017102.1 Corchorus olitorius cultivar O-4 contig17135, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1694
ACGTcount: A:0.37, C:0.12, G:0.11, T:0.40


Found at i:680 original size:50 final size:49

Alignment explanation


    Indices: 621--722  Score: 168
    Period size: 50  Copynumber: 2.1  Consensus size: 49

        611 ATATCCTTCT

                             **                               
        621 TTATCTTTAACTTTTAAGGTTTAATATGTAATTTTTATTTATCAATTAAA
          1 TTATCTTTAACTTTTAAAATTTAATATGTAA-TTTTATTTATCAATTAAA

                                  *                          
        671 TTATCTTTAACTTTTAAAATTTCATATGTAATTTTATTTATCAATTAAA
          1 TTATCTTTAACTTTTAAAATTTAATATGTAATTTTATTTATCAATTAAA

               
        720 TTA
          1 TTA

        723 AATATATTAA


Statistics
Matches: 49,  Mismatches: 3, Indels: 1
        0.92            0.06        0.02

Matches are distributed among these distances:
  49   21  0.43
  50   28  0.57

ACGTcount: A:0.35, C:0.07, G:0.04, T:0.54


Consensus pattern (49 bp):   
TTATCTTTAACTTTTAAAATTTAATATGTAATTTTATTTATCAATTAAA
Done.