genome.fa.s17107.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017107.1 Corchorus olitorius cultivar O-4 contig17140, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  61171

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17942--17969	14	2.0	14	100	0	56	42	21	21	14	1.88
20738--21533	399	2.0	394	95	1	1441	33	18	13	34	1.90
22905--23143	129	1.9	128	82	6	304	41	11	19	28	1.86
26519--26560	19	2.3	18	84	8	57	33	4	0	61	1.17
27072--27124	26	2.1	25	89	6	81	60	3	15	20	1.50
34541--34621	39	2.0	40	92	2	137	50	8	3	37	1.51
34612--34658	25	1.9	24	95	4	85	29	6	8	55	1.55
35636--35705	36	1.9	36	91	0	113	60	8	10	21	1.55
38233--38284	11	4.8	11	79	13	63	0	3	17	78	0.89
38242--38284	6	7.3	6	82	12	54	0	2	16	81	0.79
39370--39433	21	3.2	20	82	8	76	35	12	18	32	1.89
39376--39433	19	2.9	19	84	5	71	36	12	18	32	1.88
45752--45798	14	3.1	15	75	9	51	51	12	10	25	1.72
46449--46508	10	5.7	10	76	18	50	80	1	16	1	0.89
46449--46519	14	4.9	15	69	19	53	80	1	16	1	0.86
46455--46519	18	3.6	17	80	12	67	80	1	16	1	0.88
46444--46532	37	2.4	37	80	10	110	75	3	16	4	1.11
47470--47928	74	6.2	73	85	4	571	23	16	14	44	1.85
47475--47929	37	12.3	37	78	9	312	23	16	14	44	1.85
47470--47918	111	4.0	111	80	5	453	23	16	15	45	1.85
49317--49570	136	1.9	137	89	2	395	39	11	1	46	1.52
50382--50416	14	2.6	14	90	4	54	28	0	0	71	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
51605--51706	50	2.1	49	88	1	150	46	6	12	34	1.69
52092--52154	21	3.1	20	81	6	56	41	1	3	53	1.26
52119--52159	21	2.0	20	90	4	64	56	0	0	43	0.99
52631--52710	41	2.0	41	89	0	124	15	37	27	20	1.92
53278--53302	13	1.9	13	100	0	50	44	0	0	56	0.99
58124--58150	6	4.5	6	100	0	54	14	33	18	33	1.92
60422--60468	20	2.3	20	92	0	76	46	8	0	44	1.33

Tables:   1

The End!