Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017109.1 Corchorus olitorius cultivar O-4 contig17142, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2450
ACGTcount: A:0.34, C:0.18, G:0.20, T:0.28


Found at i:426 original size:44 final size:44

Alignment explanation


    Indices: 372--466  Score: 154
    Period size: 44  Copynumber: 2.1  Consensus size: 44

        362 AATAAGTCGA

                                         *               
        372 CGCCATAAGTCGATGCAGAGGTAGAGGGCGATAAATAATCAACCC
          1 CGCCA-AAGTCGATGCAGAGGTAGAGGGCAATAAATAATCAACCC

                                       *              * 
        417 CGCCAAAGTCGATGCAGAGGTAGAGGGTAATAAATAATCAACGC
          1 CGCCAAAGTCGATGCAGAGGTAGAGGGCAATAAATAATCAACCC

                  
        461 CGCCAA
          1 CGCCAA

        467 TGTTGAAAGG


Statistics
Matches: 47,  Mismatches: 3, Indels: 1
        0.92            0.06        0.02

Matches are distributed among these distances:
  44   42  0.89
  45    5  0.11

ACGTcount: A:0.37, C:0.22, G:0.26, T:0.15


Consensus pattern (44 bp):   
CGCCAAAGTCGATGCAGAGGTAGAGGGCAATAAATAATCAACCC
Done.