Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017111.1 Corchorus olitorius cultivar O-4 contig17144, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4696
ACGTcount: A:0.35, C:0.14, G:0.12, T:0.40


Found at i:1428 original size:2 final size:2

Alignment explanation


    Indices: 1421--1445  Score: 50
    Period size: 2  Copynumber: 12.5  Consensus size: 2

       1411 AATTTATTCG

                                                 
       1421 AT AT AT AT AT AT AT AT AT AT AT AT A
          1 AT AT AT AT AT AT AT AT AT AT AT AT A

       1446 CTAGTAAAGG


Statistics
Matches: 23,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   2   23  1.00

ACGTcount: A:0.52, C:0.00, G:0.00, T:0.48


Consensus pattern (2 bp):   
AT

Found at i:3752 original size:33 final size:33

Alignment explanation


    Indices: 3715--3782  Score: 136
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       3705 CACAAACTTA

                                             
       3715 AACTTTTTAATATTAGCTACATAACTAATTTTT
          1 AACTTTTTAATATTAGCTACATAACTAATTTTT

                                             
       3748 AACTTTTTAATATTAGCTACATAACTAATTTTT
          1 AACTTTTTAATATTAGCTACATAACTAATTTTT

              
       3781 AA
          1 AA

       3783 TATTTTTTCT


Statistics
Matches: 35,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  33   35  1.00

ACGTcount: A:0.38, C:0.12, G:0.03, T:0.47


Consensus pattern (33 bp):   
AACTTTTTAATATTAGCTACATAACTAATTTTT
Done.