Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017113.1 Corchorus olitorius cultivar O-4 contig17146, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4790
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:1171 original size:11 final size:11

Alignment explanation


    Indices: 1155--1190  Score: 63
    Period size: 11  Copynumber: 3.3  Consensus size: 11

       1145 AATGAATAAT

                       
       1155 CAATCCAAAAA
          1 CAATCCAAAAA

                       
       1166 CAATCCAAAAA
          1 CAATCCAAAAA

            *          
       1177 TAATCCAAAAA
          1 CAATCCAAAAA

               
       1188 CAA
          1 CAA

       1191 ACAATTTTCT


Statistics
Matches: 23,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  11   23  1.00

ACGTcount: A:0.64, C:0.25, G:0.00, T:0.11


Consensus pattern (11 bp):   
CAATCCAAAAA
Done.