Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017116.1 Corchorus olitorius cultivar O-4 contig17149, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2591
ACGTcount: A:0.32, C:0.23, G:0.16, T:0.29


Found at i:2077 original size:13 final size:13

Alignment explanation


    Indices: 2061--2121  Score: 51
    Period size: 13  Copynumber: 5.0  Consensus size: 13

       2051 GCTGGCCCGT

                         
       2061 GCGCCTGGCCTAG
          1 GCGCCTGGCCTAG

                    *    
       2074 GCGCCTGGTCTAG
          1 GCGCCTGGCCTAG

             *  *         
       2087 GTGCTTGGGCC---
          1 GCGCCT-GGCCTAG

                         
       2098 GCG-CTGGCCTA-
          1 GCGCCTGGCCTAG

                         
       2109 GCGCCTGGCCTAG
          1 GCGCCTGGCCTAG

       2122 CGTTTGCGCC


Statistics
Matches: 37,  Mismatches: 6, Indels: 10
        0.70            0.11        0.19

Matches are distributed among these distances:
   9    4  0.11
  10    1  0.03
  11    5  0.14
  12    8  0.22
  13   16  0.43
  14    3  0.08

ACGTcount: A:0.07, C:0.34, G:0.39, T:0.20


Consensus pattern (13 bp):   
GCGCCTGGCCTAG
Done.