Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01017123.1 Corchorus olitorius cultivar O-4 contig17156, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  77189

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1669--1708
14
2.9
14
80
0
53
7
5
42
45
1.54
7303--7353
26
2.0
26
92
0
84
25
9
27
37
1.87
9353--9473
27
4.5
27
92
0
179
41
25
17
15
1.89
12064--12094
2
15.5
2
100
0
62
48
0
0
51
1.00
14519--14571
25
2.1
25
82
6
63
37
9
24
28
1.86
17115--17185
36
2.0
36
88
5
108
52
25
5
16
1.66
22996--23026
12
2.6
12
94
0
53
0
3
3
93
0.41
26087--26119
18
1.9
17
88
11
50
39
21
15
24
1.91
32919--32951
17
2.0
17
88
5
50
69
0
9
21
1.15
33965--34016
23
2.2
23
82
3
59
23
28
25
23
1.99
39747--39933
90
2.1
90
100
0
374
29
19
18
32
1.96
57158--57188
1
31.0
1
100
0
62
0
0
0
100
0.00
60876--60902
4
6.8
4
100
0
54
0
25
0
74
0.83
65057--65162
53
2.0
53
94
0
185
40
21
17
19
1.91
66749--67141
163
2.4
160
87
5
583
30
19
19
30
1.96
67257--67291
12
2.9
12
86
0
52
42
0
0
57
0.99
68741--68812
26
2.7
26
84
2
90
19
13
23
43
1.87
74335--74369
17
2.1
17
94
0
61
5
2
11
80
1.00

Tables:   1

The End!