Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017125.1 Corchorus olitorius cultivar O-4 contig17158, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4549
ACGTcount: A:0.32, C:0.17, G:0.20, T:0.31


Found at i:4138 original size:25 final size:24

Alignment explanation


    Indices: 4085--4138  Score: 56
    Period size: 25  Copynumber: 2.2  Consensus size: 24

       4075 GGGACATATG

                                   **
       4085 CTCGGAGCCCCAATGCATCCCAATG
          1 CTCGGAGCCCCAATGCA-CCCAAAA

                                      
       4110 CTCGGAGCCCCAATGGC-CCCGAAAA
          1 CTCGGAGCCCCAAT-GCACCC-AAAA

                
       4135 CTCG
          1 CTCG

       4139 ATCACTCACT


Statistics
Matches: 25,  Mismatches: 2, Indels: 4
        0.81            0.06        0.13

Matches are distributed among these distances:
  24    3  0.12
  25   20  0.80
  26    2  0.08

ACGTcount: A:0.24, C:0.41, G:0.22, T:0.13


Consensus pattern (24 bp):   
CTCGGAGCCCCAATGCACCCAAAA
Done.