Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01017128.1 Corchorus olitorius cultivar O-4 contig17161, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3351
ACGTcount: A:0.30, C:0.20, G:0.18, T:0.31


Found at i:2927 original size:16 final size:15

Alignment explanation


    Indices: 2889--2930  Score: 66
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       2879 ACAGAGATTG

                   *       
       2889 ACAGAAAGCAATTAA
          1 ACAGAAAACAATTAA

                           
       2904 ACAGAAAACAATTAA
          1 ACAGAAAACAATTAA

                        
       2919 ACTAGAAAACAA
          1 AC-AGAAAACAA

       2931 AGCAGAGTAA


Statistics
Matches: 25,  Mismatches: 1, Indels: 1
        0.93            0.04        0.04

Matches are distributed among these distances:
  15   16  0.64
  16    9  0.36

ACGTcount: A:0.64, C:0.14, G:0.10, T:0.12


Consensus pattern (15 bp):   
ACAGAAAACAATTAA
Done.